Peribacillus frigoritolerans: L8956_01415
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Entry
L8956_01415 CDS
T08180
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pfri
Peribacillus frigoritolerans
Pathway
pfri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L8956_01415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfri03019
]
L8956_01415
03009 Ribosome biogenesis [BR:
pfri03009
]
L8956_01415
Enzymes [BR:
pfri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L8956_01415
Messenger RNA biogenesis [BR:
pfri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L8956_01415
Ribosome biogenesis [BR:
pfri03009
]
Prokaryotic type
rRNA helicases
L8956_01415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
CMS1
Motif
Other DBs
NCBI-ProteinID:
ULM97467
LinkDB
All DBs
Position
275437..276936
Genome browser
AA seq
499 aa
AA seq
DB search
MTLFSELGLDRTSMKSIEKMGFEEASPIQSQTIPLALEGKDIIGQAQTGTGKTAAFGIPL
MENIDINNENVQGIVIAPTRELAIQVSEELFKLGYGKRARVLAVYGGQDIDRQIRALKKK
PHIIVGTPGRLLDHIKRKNIKLGGVHTVVLDEADEMLNMGFIEDIELILSTVPDERQTLL
FSATMPDPIRKIAERFMREPVLVRVKAKEMTVDRIEQYYLELKESEKFDTLARLFDIQTP
DLAIVFGRTKRRVDELASALNIRGYMAEGIHGDLSQAKRLSVLKKFKDGSIDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKHGIAITFVTPRERGQLHAVEHTTK
KRMEKLKTPTLTEALEGQQKAVTEKILNTIENEDLTLYLGQAEELLQKHSAADLVAAMLK
SMTKEPDQTPIKLTEESPSPMRRNRGGSSSSGNRQRNGRSSSGRKDYGSGSGKRPSTNRK
SNGYGNRSTSQKREKTNKI
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
ttgacattgtttagcgaattaggattagatagaacgtccatgaaatcaatagaaaaaatg
ggatttgaagaagcgagcccgattcaatcccaaacgatacctctagcacttgaaggtaaa
gatatcattggtcaagcgcaaacgggaacaggtaaaacagcagcattcggtattccattg
atggaaaacatcgatattaataacgaaaacgtgcaagggattgtcattgcacctacacgt
gagcttgccattcaagtttccgaggaacttttcaagcttggttacggaaaacgtgctcgt
gtacttgcagtttatggtggacaagacatcgaccgccaaatccgtgctttaaagaaaaaa
ccacatattatcgttggtacgccaggtcgtcttttagaccatatcaaacgtaaaaatatt
aaattaggcggagttcacactgtagttcttgatgaagcggatgaaatgcttaacatggga
ttcattgaggatatcgaattgatcctttcaacggttcctgacgaaaggcaaacattgctt
ttctcagctacaatgcctgatccgatccgtaaaattgctgaaagattcatgcgggaacca
gttcttgtacgtgtaaaagcaaaagaaatgacagtggatcgtatcgaacaatattacttg
gagttaaaagaaagtgaaaaattcgatacacttgcacgccttttcgatattcaaacaccg
gatcttgcaatcgtcttcggacgtacgaaacgccgtgtcgatgaattggcatctgcattg
aatatccgcggttatatggctgagggcattcatggtgaccttagtcaggcaaaacgcctt
tctgttttgaaaaagtttaaagacggcagcatcgatgtactcgttgctactgatgttgct
gcacgtggacttgatatttccggcgttactcacgtatacaactttgatatccctcaagat
ccggaaagctacgttcaccgtattggacgtacaggacgtgcgggtaaacatggtatagcc
attacgtttgtaacaccaagagaaagaggccaactgcatgcagttgaacatacaacgaaa
aaacgtatggagaaacttaagactcctacgttaactgaagcgttggaaggtcaacaaaaa
gcagtaacggaaaaaatccttaatacaatcgagaatgaggatttaactttataccttggt
caagcggaagaattattacaaaaacatagcgcagcggatttagttgcagccatgcttaaa
tcaatgacaaaagaaccggatcaaacgcctatcaagttaacggaagaatctccgtctcca
atgcgtcgcaatcgcggaggaagcagttcttctggcaacagacagcgcaatggccgcagt
tcttcaggcagaaaagattacggcagcggatcagggaaacgcccaagcacgaaccgtaaa
tcgaatggttacggaaaccgcagcacgagccaaaaaagagaaaaaactaataagatttaa
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