Peribacillus frigoritolerans: L8956_03260
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Entry
L8956_03260 CDS
T08180
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pfri
Peribacillus frigoritolerans
Brite
KEGG Orthology (KO) [BR:
pfri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfri03009
]
L8956_03260 (rlmD)
Enzymes [BR:
pfri01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
L8956_03260 (rlmD)
Ribosome biogenesis [BR:
pfri03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
L8956_03260 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
Cons_hypoth95
MTS
Methyltransf_15
TehB
Methyltransf_11
Methyltransf_12
Ubie_methyltran
Sec2p
Motif
Other DBs
NCBI-ProteinID:
ULM97777
LinkDB
All DBs
Position
676801..678186
Genome browser
AA seq
461 aa
AA seq
DB search
MTNIQDTKLEVNQTLPLTIKRLGINGEGVGYFKKKVVFVPGALPGEEIVALVTKVQPNFT
EAKIKTIRKESPHRIAAPCPVYAECGGCQLQHLSYDQQLVEKRDIVIQAMERHSKFPVSS
LNIKETIGMEDPWNYRNKSQYQVGQKDGKLIAGLYGMNSHTLIDIPNCLVQHKATNKVTR
TVKKILKNLNISIYNERKRKGVIRTVITRVGFETGEVQVVLVTGAEEIPQKDQLLKQIRD
QLPEVKSVVQNINNRDTSLIFGEKTIHLAGEKVINETLGDLSYELSARTFFQLNPVQTVR
LYDEVKKAAALTGTEKVVDAYCGVGTIGLWLSENAKEVRGMDVIKESIEDAKKNAKKHKR
NNVYYETGKAENILPRWTKEGWKPDVLVVDPPRSGCDQSLLQTILKVKPKTIVYVSCNPS
TLAKDLQELGSSYRVEAMQPVDMFPQTSHVEVVTSLKLIKE
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacattcaagatacaaaactagaagtgaatcaaacccttccccttacgattaaa
cggctgggaattaacggagagggagtcggttatttcaaaaagaaagtcgtcttcgtccca
ggagcattacctggtgaggaaattgtagctttggttacaaaggttcagccaaacttcacc
gaggcgaaaataaaaaccatccgtaaagaatcaccgcatcgcattgctgcgccatgtcca
gtttacgctgaatgcggtggttgtcagttgcagcatttgagctatgaccagcagcttgtt
gaaaaacgcgatatcgtcattcaagcgatggaacgtcattcaaaattcccagtttcttca
ttaaatataaaagaaacgatcggcatggaagatccttggaattatcgcaataaaagtcag
taccaagttggccaaaaagatggcaagttgattgcaggcctttatggcatgaattcccat
acactgatcgatatcccgaattgccttgtacagcataaggcaacgaataaggtaacacgt
acagtgaaaaagatactgaagaacctgaacatctcgatttataacgaaagaaaaagaaaa
ggtgtcatccgtactgtcattacacgggtaggatttgaaacaggtgaagtccaggttgtc
cttgttacgggagcggaggaaattccacaaaaagatcagttgctaaaacaaattcgtgac
caattgccagaagtgaaatcggtcgtacaaaacatcaacaaccgggacacatcactgatc
tttggcgaaaaaacgattcacctggcaggcgaaaaagtcatcaacgaaacattgggtgac
ctatcatacgaactatcggcccgtacattcttccagcttaacccggttcaaactgttcgc
ttatatgatgaagtgaaaaaagcagcagccttaaccggcacggaaaaagtggttgacgct
tattgcggtgttggaaccattgggctatggctatctgaaaacgccaaggaagtcagagga
atggacgtcatcaaagaatccattgaggacgccaagaaaaatgccaaaaaacataaacgc
aacaatgtatactatgaaacaggcaaagccgagaatatccttccacgctggaccaaagaa
ggctggaaaccggacgtactggtcgtcgacccgccaagatccggctgtgaccaatcttta
ctgcagacaatcttgaaagttaaaccgaaaaccatagtgtacgtatcatgcaacccgtcc
acattggcgaaggacttacaagaactgggctcatcatatcgagtggaggccatgcagccc
gtggacatgttcccgcaaacgagccatgtggaagtagtaacctcattgaagctgattaaa
gaataa
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