Peribacillus frigoritolerans: L8956_08550
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Entry
L8956_08550 CDS
T08180
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pfri
Peribacillus frigoritolerans
Pathway
pfri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L8956_08550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfri03019
]
L8956_08550
Messenger RNA biogenesis [BR:
pfri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L8956_08550
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
P8
Motif
Other DBs
NCBI-ProteinID:
ULM98719
LinkDB
All DBs
Position
1767910..1769580
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AA seq
556 aa
AA seq
DB search
MGKDKNNGIKVISLGGQGELGKNMYVVEVNEDIYLLDAGLMLPEDEMLGIDAVIPDISYL
MDNKERVQGIFITHGHEDHMGALAYVLKYLPAPVYGTKLTLALIKTKLKEDGFNGRATFT
EIDSDSLLSFPQAAVSFFRTNHSIPDSVGVVIHTREGAIVYTGDFKFDQAATDLYKPEIG
KMASIGEEGVLCLLSDSTGAERPGYTTSEAVVAKDITEAFHAASGRIIVACFASNINRIQ
HVFNAAAASRRKVAVVGKSLQRVYETALNLGYLKVEEELIIPINEIGQYDDREIVVLSTG
HQGEPIAALQKMAKQTHKQVTIKKGDTVLISASPLQGGELILSKTVDLLYRVGAEVVSAN
KYKVHVTGHGSQEELKMMINLMNPKFLIPVHGEYRHLYAHQKVGVAAGIKRENIIIAEKG
DVIELKGNKMGLSGKVSAGNILIDGSGVGDVGNIVLRDRRLLSQDGILIVVVTLNRQDKS
IAAGPEIISRGFVYVRESEKMIAEATEIVSEIVKKNGSRQPFDWSTLKQEMRDALNQFFY
EKTKRRPMILPIIMEY
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
ttgggtaaagataaaaataatggaataaaagtgatttctcttggaggacaaggggagctt
ggtaaaaatatgtacgtcgttgaggtgaacgaggacatctatcttcttgatgcaggatta
atgctgccggaagacgaaatgctcggaatcgatgcggtcatcccagatatttcttatttg
atggataataaggaacgggtgcaggggatattcattacccatggtcatgaagaccatatg
ggagcgcttgcttatgtcttgaaatatttaccggctcctgtttatggaacaaagcttaca
cttgctttaatcaaaacgaaattaaaggaagatggctttaacggcagggcaactttcact
gaaatcgattcggattcccttttaagtttccctcaagcagccgtgtcctttttccggact
aaccatagcattcccgattctgtcggagtcgtgattcacactcgtgaaggtgcaatcgtt
tatacaggggatttcaaattcgaccaggcagcaacggatctatataagccggaaatcggt
aagatggccagtatcggtgaagaaggtgtcctatgcctgctttcggatagtaccggtgcc
gagaggccaggttatacgacttcagaagcagttgtggccaaagatattacagaggctttc
catgctgcctccggaaggatcatcgttgcgtgcttcgcttcgaacatcaaccggattcaa
catgttttcaatgcagcggcagcaagtcgcagaaaagtggcagttgtaggaaaaagcctt
caacgcgtttatgaaacagccttgaatcttggctacttaaaggtcgaagaagagctgata
atcccgattaatgaaattggccagtatgacgaccgtgaaatcgtcgtgttatcgacaggt
catcagggcgaacccattgctgcacttcaaaaaatggcaaagcagacccacaagcaggta
acgatcaaaaagggagacaccgttttgatcagtgcatcacccctgcagggcggtgaactt
attttatccaaaaccgtcgatttgctatacagggtaggtgctgaagtggtatctgccaat
aaatataaagtgcatgtaacagggcatggcagccaggaagagctaaaaatgatgatcaat
ttgatgaatcctaaattcttaatccctgtacatggggaatatcgccatttatatgcccat
caaaaagttggggttgctgcgggaattaagcgtgaaaacatcataattgccgaaaaaggg
gatgtcatcgaacttaagggcaataaaatggggctttccggcaaagtctctgctggaaat
atcttgatagatggcagcggtgttggagatgtgggtaatatcgttcttcgtgatcggcgc
ttgttatcacaagatggcattttgattgtagttgtcacgttgaaccgtcaggataaaagc
attgcagcaggccctgaaatcatttcaaggggcttcgtatatgttcgcgaatcagaaaaa
atgattgcggaagcaactgaaatagtaagtgaaatcgtaaagaaaaatgggtcgcgccag
ccttttgattggtccacgctgaagcaggaaatgcgtgatgcgttaaaccaattcttctat
gaaaaaacgaaacgccgcccaatgattttaccgatcataatggaatattaa
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