Pseudomonas fluorescens SBW25: PFLU_0274
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Entry
PFLU_0274 CDS
T00899
Name
(GenBank) Putative ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pfs
Pseudomonas fluorescens SBW25
Pathway
pfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFLU_0274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfs03019
]
PFLU_0274
03400 DNA repair and recombination proteins [BR:
pfs03400
]
PFLU_0274
Enzymes [BR:
pfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PFLU_0274
Messenger RNA biogenesis [BR:
pfs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFLU_0274
DNA repair and recombination proteins [BR:
pfs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PFLU_0274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
CAI2794601
UniProt:
C3K4K1
LinkDB
All DBs
Position
1:297865..299808
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AA seq
647 aa
AA seq
DB search
MHDTLQQVFGYPQFRLGQEQTISAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTVVVS
PLLALMQDQLGFLQRHGISAGSIDSAQSRDEANEVMARARSGELKILMISVERLKNERFR
NFLQSVQISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQALLLTATATPKVIADM
QAKFAIAPDDVVTTGFYRPNLNLLVEPVSGSDKRRRLVEWMNERANQPSIVYVTLQKTAE
QIAEHLNRNGIQAEAYHAGLPHDKREGIQQRFMGGRSHCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQDGIRRVLDELQ
AARSEGQWEFLLRSLSDHSNIRELPLKTLLVQLELKGVIAPRYAFYAEYRFKYLIEPEAL
LARFSGERQQFVAAIIQVCKRAKTWATVDFDALYQQHNAERGRVVKALDYFQEQGLIELE
SKQMTEVYSLLNTDFDPQALSEALYTGFKQHEVGEVARIHAMLDLFATEHCLGQRLAKYF
GDENAPQRCGHCSVCHGHVAHLPPPPSLPPLVDKNFMGLCGDFIHRHHEHTGQLPGAERL
TRFLGGISVPLFTKLKARGIPGFAALEEYPYAAVRTWAQTGLSALDQ
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacaccctccagcaggtcttcggttatccacagtttcgtttgggccaggagcaa
acgatcagcgctgtactggccggccgttcggcggcggcaattttccccaccgggtcgggc
aagtccctgtgttaccagctgtcggcggtgttgctgccgcacctgacagtggtggtgtcg
ccgttgttggcgttgatgcaggaccagttgggtttcctgcagcggcatggcatttcggca
ggcagtatcgattcggcccagagccgtgacgaggccaatgaagtgatggcccgtgcgcgc
tccggtgagctgaaaatcttgatgatttcggtggaacgcttgaagaacgagcgatttcgc
aacttcctgcaaagtgtgcagatttcgctgctggtcgtggacgaggcgcactgtatttcc
gaatggggccacaacttccgcccggactatctgaagctgccggactaccagcgtcagttc
aatattccacaagcgctgctgctgacggctacagcgacgcctaaggtgattgccgacatg
caggcgaagttcgccattgcgccggacgatgtggtgactacgggcttctaccggcccaat
ctcaacctgttggtggagccggtcagcggctctgacaagcgccgacgcttggtggagtgg
atgaacgagcgcgccaatcaacccagcatcgtctacgtcaccttgcagaaaaccgccgag
cagattgccgagcacctgaaccgtaatggcatccaggccgaggcttatcacgcgggttta
cctcacgataagcgcgagggcatccagcagcgtttcatgggcgggcgctcccattgcatt
gtcgctaccatcgcgtttggcatgggcatcgacaagagtgatatccgcaacgtggtgcac
ttcgacctgcccaaatccatcgagaactacagccaggaaatcggccgtgcggggcgtgat
gggcagccgtccgactgcctggtgttggccaaccgcgacagccttaatgtgctggaaaac
tttgtgtacggcgatacgcccgagcaggacggtattcgccgggtactcgatgagttacag
gcagcacgcagtgaggggcagtgggagttcctgctgaggtcgctgtcggaccacagtaat
atccgcgagctgccgctcaagacgttgctggtgcagctggagctcaagggcgtgatagcg
ccgcgctacgcgttctacgccgaataccgtttcaaatacctgatcgaacctgaggctttg
ctggcgcgtttctccggcgaacgacagcagtttgtcgcggcgatcatccaagtctgcaaa
cgggcaaagacctgggcgacggtggattttgacgcgctttatcaacagcacaatgccgaa
cgtgggcgggtggtgaaggcgctggactatttccaggagcagggcttgatcgagctggaa
agcaagcagatgaccgaggtctacagtttgctgaatacagattttgacccacaggcactg
agcgaagcgttatacacaggcttcaagcagcacgaggtgggcgaagtggcgcgaattcac
gccatgctcgatctgttcgccaccgagcactgcctggggcagcgcctggcgaagtatttt
ggtgatgaaaacgcaccgcaacgttgcggtcattgctcggtgtgtcacgggcacgttgcg
cacctgccgccaccgccaagcttgccgccgcttgtggataaaaacttcatgggactgtgc
ggtgattttatccacaggcatcatgaacacaccggccaactgccaggtgcggaacgcctg
acgcgtttccttggtggcatcagtgtgccgttgtttaccaagttgaaggcgcgggggata
ccgggttttgcagccttggaagagtacccgtacgcagcggtaagaacgtgggcgcagacg
gggctgagtgctttggaccagtaa
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