Pseudomonas fluorescens SBW25: PFLU_0882
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Entry
PFLU_0882 CDS
T00899
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
pfs
Pseudomonas fluorescens SBW25
Pathway
pfs02020
Two-component system
pfs02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PFLU_0882 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PFLU_0882 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfs03021
]
PFLU_0882 (rpoN)
Transcription machinery [BR:
pfs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PFLU_0882 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
TrmO_C
HTH_21
Motif
Other DBs
NCBI-ProteinID:
CAI2795189
UniProt:
C3K842
LinkDB
All DBs
Position
1:complement(991553..993046)
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AA seq
497 aa
AA seq
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MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNAD
PLADNIEQKPNPDVQEPSYQETAPTVDNLEEGEWNERIPNELPVDTAWEDVYQTSASSLP
SNDDDEWDFTTRTSVGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLEEI
LEAFDPELDIELDEIEAVLHRIQQFEPAGIGARTLSECLLLQLRQLPAKTPWLAEAQRLV
TDYIDLLGSRDYSQLMRRMKLKEDDLRQVIELVQSLNPRPGSQIESSEAEYVVPDVIVRK
DNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL
MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK
YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctagtcctgagaatgggccagcagctgacgatgacaccgcagctgcaa
caggccatccgcctgctccaattgtcgaccctggacctgcaacaggaaatccaggaggcc
ctggagtccaatccgatgctcgaacgccaggaggaaggcgacgacttcgataatgcagac
ccgctggccgataatatcgagcaaaaacccaatcccgacgtgcaggaaccctcctaccag
gaaaccgcccctacggtggataaccttgaggaaggcgaatggaacgaacgcattcccaac
gagcttccggtcgacacggcctgggaagacgtctaccagaccagcgccagcagcctgccc
agcaatgacgatgatgagtgggacttcaccacccgcacctccgttggcgagagcctgcag
agccacctgctgtggcaactgaaccttgcgccgatgtcggacaccgatcgcttgatcgcc
gtgaccctgatcgactgcatcaacaatcagggttacctggacgagacgctcgaagaaatt
cttgaagccttcgatccggagctggatatcgagctggacgagatcgaagccgtcctgcac
cgcatccaacagttcgagcccgccggcatcggcgcacgcaccctcagcgaatgcctgttg
ctgcaattgcgccaattaccggccaagaccccctggctcgccgaagcccagcgcctggtg
accgattacatcgacctgctgggcagccgcgactacagccagttgatgcgccgcatgaag
ctcaaggaagacgacctgcgccaggtcatcgagctggtacagagcctcaacccgcgtcct
ggctcacaaatcgaatcgagcgaagccgaatacgtggttcccgatgtgatcgtgcgcaag
gacaacgagcgctggctggtagagctgaaccaggaatcggtgccgcgcctgcgggtgaac
ccgcaatacgccggcttcgtacgtcgcgccgataccagtgccgacaacaccttcatgcgc
aaccagttgcaggaagcgcgctggttcatcaagagcctgcaaagccgaaacgaaaccctg
atgaaagtcgccacccagatcgtcgagcatcagcgcggcttcctggagtacggcgacgaa
gcgatgaaaccgctggtgctgcatgacatcgccgaagcggtcggcatgcatgaatcaacg
atttcccgggtgaccacgcaaaaattcatgcatacccctcggggtatttatgaactgaaa
tactttttctccagccacgtcagcacctccgaaggcggtgaatgctcgtccacggcgatc
cgcgcgatcatcaaaaaactggttgctgctgaaaatcagaaaaagccattgagtgacagt
aagatcgctggtttactggaggcacaaggcattcaggtcgcccgtcgaaccgtcgccaag
taccgcgaatcccttgggatcgcgccttccagcgagcgtaagcgtttgatgtga
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