Pseudomonas fluorescens SBW25: PFLU_0998
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Entry
PFLU_0998 CDS
T00899
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pfs
Pseudomonas fluorescens SBW25
Pathway
pfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFLU_0998 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfs03019
]
PFLU_0998 (rhlB)
Enzymes [BR:
pfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFLU_0998 (rhlB)
Messenger RNA biogenesis [BR:
pfs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFLU_0998 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
CAI2795302
UniProt:
C3KEA8
LinkDB
All DBs
Position
1:complement(1108074..1109297)
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AA seq
407 aa
AA seq
DB search
MIPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIG
RAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYT
GLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRM
LDMGFIPQVRQIIRQTPPKAERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEALNVASEN
VEQHIYAVAGADKYKLLYNLVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDV
PQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRA
GAAGVSISFAGEDDSYQLPSIETLLGRKISCETPPTHLLRAVERKRP
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
gtgatcccatggaaactcgaagacttcgtcgtcgagccccaggaaggcaagacccgcttc
cacgatttcaaactggccccggaactgatgcacgccatccaggacctgggtttcccgtac
tgcacgccgatccaggcgcaggtgctcggctttaccctcgccggcaaagacgccatcggt
cgcgcccagaccggtaccggcaagaccgccgccttcctgatctcgatcatcacccagctg
ctgcagacgccaccgccgaaagaacgctacatgggtgagccgcgcgcactgatcatcgcc
ccgacccgcgagctggtggtgcagatcgccaaggacgccgccgacctcaccaagtacacc
ggcctcaacgtcatgacgttcgtcggcggcatggacttcgacaagcagctcaagcacctt
gaagcccgtcactgcgacattctggtggccacgccgggccgcctgctggacttcaaccag
cgcggcgacgtgcacctggacatggtcgaagtgatggtgctggacgaagccgatcgcatg
ctcgacatgggctttatcccgcaagtgcgccagatcattcgccagaccccaccgaaggcc
gagcgccagaccctgctgttctccgcgaccttcaccgaagacgtgatgaacctcgccaag
cagtggaccaccgacccgtccatcgtcgagatcgaagcgctcaacgtcgccagcgagaac
gtcgagcaacatatctacgccgtggccggtgccgacaagtacaagctgctctacaacctg
gtcaacgacaacggttgggagcgcgtgatggtgttcgccaaccgcaaggacgaagtgcgg
cgtatcgaggagcgcctggtgcgtgatggtgtgaacgccgcgcagctgtccggcgatgtg
ccgcaacacaagcgcatcaagaccctggaaggtttccgcgaaggcaagattcgtgtgctg
gtggccaccgacgtagcgggtcgcggcattcacatcgacggcatcagccacgtgatcaac
ttcaccctgccggaagtgccggacgactacgtgcaccgcattggccgtacagggcgggcc
ggggcggcgggtgtgtcgatcagctttgccggggaagatgactcctatcagctgccgtcg
atcgaaacgctgctgggtcgcaagatcagttgcgaaacccctccgacacatttattgcgg
gccgtagagcgcaaacgcccgtaa
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