Pseudomonas fluorescens SBW25: PFLU_1352
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Entry
PFLU_1352 CDS
T00899
Symbol
rapA
Name
(GenBank) RNA polymerase associated protein
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pfs
Pseudomonas fluorescens SBW25
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfs03021
]
PFLU_1352 (rapA)
Transcription machinery [BR:
pfs03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
PFLU_1352 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAI2795645
UniProt:
A0AA35HVQ2
LinkDB
All DBs
Position
1:complement(1491960..1494806)
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AA seq
948 aa
AA seq
DB search
MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGDTRQYALRNAPLTRVRFSPG
DSITHFEGWKMTVQEVDDVDGLLVYHGLNGQHEQVTLPETQLSNFIQFRLASDRLFAGQI
DPLAWFSLRYHTLEHTSRQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG
LGKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIESDA
TNPFEDTQLALVALEWLVDDEKAQDALFAAGWDLLVVDEAHHLVWHEDKASAEYSLVEQL
AEVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLHAFRAESENYRPVAEAVQELLDK
GRLSPKAHETIQGFLGNEGEALLTAVNDGDTEASARLVRELLDRHGTGRVLFRNTRAAVQ
GFPERKLHAYPLPNPDEYMELPLGEHAELYPEVSFQSQPDVEEEHRWWRFDPRVEWLIDQ
LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGA
QVLICSEIGSEGRNFQFSHHLVLFDLPSHPDLLEQRIGRLDRIGQKHVIELHVPYLETSP
QERLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLENADDGEWQALIDEARAERERLE
QELHTGRDRLLELNSGGAGEGDALVEDILEQDDQFALPIYMETLFDAFGIDSEDHSENAL
ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGN
TAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLSGRVTF
ETLNDQLESVPRASANKFIQAQRDQLTPRINAGEEKITPRHAERVAEAKRRLAADTDEEL
ARLTALQAVNPTVRDSELVALRTQREQGLAMLDKAALRLEAIRVLVAG
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagtatcaaccggggcaacgctggattagtgacagcgaagcagagctgggg
ttaggcaccgttctggcacaggacggccgcttgttgaccgtgctctatccggccactggc
gacacccgccagtatgcgctacggaatgcgcccctcacccgcgtgaggttctcgccgggt
gactccatcacccatttcgaaggctggaaaatgaccgtgcaggaagtcgacgatgtcgac
ggcctgctggtgtaccacggcctcaatgggcagcacgagcaggtcaccctgccggaaacc
caactgtccaacttcattcagttccgcctggccagcgaccgcctgttcgccgggcagatc
gacccgctggcctggttctcgctgcgttaccacacgctggaacacaccagccgccaattg
cagtcttcgttgtggggcctgggtggtgtgcgtgcgcaacctatcgctcaccaattgcac
atcgcccgtgaagtcgctgaccgtatcgcgccacgggtattgctggctgacgaagtcggc
ttgggcaagaccatcgaagccggcctggtgatccatcgccaattgctgtcgggccgcgcc
agccgcgtgttgatcctggtaccggaaaacctgcagcaccagtggctggtggaaatgcgc
cgccgcttcaacctgcaggtcgcgctgttcgatgaagagcgctttatcgaaagcgatgcg
accaacccgttcgaagacacccagttggccctggtggccctggaatggctggtcgacgac
gaaaaggcccaggacgcgctgttcgcggccggttgggacctgttggtggtcgacgaagcc
caccacttggtgtggcatgaagacaaagccagcgccgaatattcgctggtcgaacaactc
gccgaagtgattcccggcgtgctgctgctcaccgctacccccgagcaactcggccaggac
agccacttcgcgcgcctgcgcctgctcgacccgaaccgtttccacgacctgcacgccttc
cgcgccgagagcgagaactatcgcccggtggccgaagccgtgcaggagttgctcgacaag
ggccgcttgtcccccaaggcccacgagactatccagggtttcctcggcaatgaaggcgaa
gcactgctgaccgccgtcaacgatggtgacaccgaagccagcgcgcgcctggtgcgtgag
ctgctcgaccgccacggcaccggccgcgtgctgttccgtaacacccgcgccgccgtgcaa
ggcttcccggagcgcaagctgcacgcctacccgttgccgaacccggacgagtacatggag
ttgccgctgggcgaacacgccgagctgtacccggaagtcagcttccagtcgcagccggat
gttgaagaagaacaccgctggtggcgcttcgacccacgggtcgagtggctgatcgaccag
ctgaaaatgctcaagcgcaccaaggtcctggtgatctgcgcccacgctgaaaccgccatg
gacctggaagacgccctgcgcgtacgttccggcatcccggccacggtgttccacgagggc
atgaacatcctcgagcgtgaccgcgccgccgcctacttcgccgatgaagagttcggcgcc
caggtgctgatctgctcggaaatcggcagtgaaggccgtaacttccagttctcccaccac
ttggtgctgttcgacctgccgtcccaccccgacctgctggaacagcggatcggccgtctg
gaccggatcggccagaaacacgtgatcgaactgcacgtgccgtacctggaaaccagcccg
caagagcgcctgttccagtggtaccacgaagcgctgaacgcgttcctcaacacctgcccg
accggcaacgccttgcagcatcagttcggcccacgcctgctgccgctgctggaaaacgcc
gacgacggcgagtggcaagccctgatcgacgaggcccgtgccgagcgcgagcgtctggaa
caggagctgcacaccggccgcgaccgtctgctggagctcaactccggcggcgcaggcgaa
ggtgatgcgctggtggaagacatcctcgagcaagacgatcagttcgccctgccgatctac
atggaaaccctgttcgacgcattcggcatcgacagtgaagaccattcggaaaacgcgctg
atcctcaagcccagcgaaaaaatgctcgacgccagcttccctctgggcgacgacgaaggc
gtgaccatcacctacgaccgtaaccaggcactgtcgcgcgaagacatgcagttcatcacc
tgggaacacccgatggtgcagggcggcatggacctggtgctgtccggttcaatgggcaac
accgccgtggcgttgatcaagaacaaggcgctcaagccgggcaccgtgttgctggaactg
ctctacgtcagcgaagtggttgccccgcgctcgctgcaactgggccgctacctgccaccg
gccgccctgcgctgcctgctggatgccaatggcaacgacctgtccggccgtgtgaccttc
gaaaccctcaacgaccagttggaaagcgtgccacgtgccagcgccaacaagttcatccag
gcccagcgcgaccagctgacgccgcggatcaacgccggtgaagagaagatcaccccacgc
cacgccgagcgcgtagccgaggccaaacgccgcctggcggcagacaccgacgaagaactg
gcgcgcctgaccgcgttgcaagcggtcaacccgaccgtacgcgacagcgagctggttgcc
ctgcgcacccaacgcgagcaaggcctggccatgctggataaggcggcgctgcgcttggaa
gcgattcgggttctggtcgccggttaa
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