Pseudomonas fluorescens SBW25: PFLU_1516
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Entry
PFLU_1516 CDS
T00899
Name
(GenBank) Ribonuclease D (RNase D) (EC
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pfs
Pseudomonas fluorescens SBW25
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfs03016
]
PFLU_1516
Enzymes [BR:
pfs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PFLU_1516
Transfer RNA biogenesis [BR:
pfs03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PFLU_1516
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
CAI2795802
UniProt:
C3K5F1
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All DBs
Position
1:1662662..1663795
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AA seq
377 aa
AA seq
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MAIDIHWICDNDSLGQHCAEWQQLPFVALDTEFMRVDTFYPIAGLIQIGDGVRAYLIDPL
TIDNWQPLAALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGFSMGY
SRLVQAVLDIELPKGETRSDWLQRPLSETQISYAAEDAVHLAEVYTRLRPRLSDEKYAWV
LDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREQQARARDLPRNRII
REHSLWPLAKSQPDNLAALGKIEDMHPRTVRQDGQFLLDLIKRAGSVPMDQWPPAVAEPL
PVDAAALIKQLRALGQTFAERLDMAPELMLRKKTLEALVKSGYPDGPYKLPDSLRGWRRE
LMGQALLDSLATAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggatctgcgacaacgatagcctcggccagcactgcgccgaa
tggcagcagttgccattcgtcgccctcgacaccgaattcatgcgggtcgacaccttttat
cccattgccgggctgatccagatcggtgatggcgtacgcgcttacctgatcgaccccctg
accatcgacaactggcaacccctggccgccttgctggaaaacccggcggtgatcaaggtg
gtgcacgcgtgcagtgaagacctcgaagtgctgctgcgcttgaccggcagcctgccggtg
ccgttgttcgacacccaattggcggcggcttacctgaacctcggtttttccatgggctat
tcgcgcctggtgcaagccgtgctggatatcgagctgcccaagggcgagacccgctcggac
tggctgcagcggccgctgtccgagacgcagatcagctacgccgccgaagacgcggtgcac
ctggccgaggtttacacgcgtttgcgtccacgactgtcggacgaaaagtacgcctgggtg
ctggacgacggtgccgaactggtcgccaacctgcgccgcgaagtcgacccgtacgaggtg
taccgcgacgccaagctggcgtggaaactgtcgcgtgcccaactcgccgtgctgcgtgaa
ctgtgcgcgtggcgcgagcagcaggcccgtgcgcgtgacctgccgcgtaaccgcatcatt
cgtgaacactcgttgtggcccctggccaaatcccagccggataacctcgccgccctgggc
aagatcgaagacatgcacccgcgcaccgtgcgtcaggacggccagttcctgctggacctg
atcaaacgggccggcagcgtgccgatggaccaatggccgcccgccgtcgccgaaccgttg
ccggtggatgccgccgctctgatcaagcaactgcgcgccttgggccaaacgttcgccgag
cgcctggacatggcgccggaactgatgctgcgcaagaaaaccctggaggccctggtcaaa
agtggctaccccgacgggccttataaattgccagactcgctgcgtggctggcgccgcgag
ttgatgggccaggcgctgctcgacagcctggccactgccggagaacagccttga
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