Pseudomonas fluorescens SBW25: PFLU_1556
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Entry
PFLU_1556 CDS
T00899
Symbol
topA
Name
(GenBank) DNA topoisomerase 1 (EC (DNA topoisomerase I)
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pfs
Pseudomonas fluorescens SBW25
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfs03032
]
PFLU_1556 (topA)
03400 DNA repair and recombination proteins [BR:
pfs03400
]
PFLU_1556 (topA)
Enzymes [BR:
pfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PFLU_1556 (topA)
DNA replication proteins [BR:
pfs03032
]
Prokaryotic type
DNA Topoisomerases
PFLU_1556 (topA)
DNA repair and recombination proteins [BR:
pfs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PFLU_1556 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
CAI2795842
UniProt:
C3K616
LinkDB
All DBs
Position
1:1704744..1707365
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AA seq
873 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLTPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGAN
VRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVAMARTYIESEFGKKYLPEKPN
VYSSKEGAQEAHEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVGAGDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDTLKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESPESGMRANQPVMT
DIPCLTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCNGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVLEIVPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQSEVDGKPTGWKAFYDGGKWKVEDKRQGA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggcaacgagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaggagcctgccgccaagcgcggcaaggccgccgcgggcgaa
ggtccggtactcacgcctaaagagaaagcgcgcaagcagctggtctcacgcatgggtgtg
gacccggatcatggctggaaggccaagtacgaaatccttccgggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaagatgccgacaccatctatctcgcaacggacttggac
cgcgaaggggaagccattgcctggcacctgcgggaagccattggcggcgacgacagccgc
tacaagcgtgtggtgttcaacgaaatcaccaagaaagccatccaggaagccttctccaag
ccgggcgaactggacatcgaccgtgtcaacgcccagcaagcgcgtcgtttcctcgaccgc
gtcgtgggttacatggtctcgccactgttgtgggccaagatcgcccgtggcctgtccgcc
ggccgtgtgcaatcggtcgcggtaaagctggtggtggagcgtgagcgcgagatccgtgcg
ttcaaccccgaagagtattgggaagtccacgccgacctcggcaccgccaagggcgccaat
gtgcgctttgaagtggcccgcgagaaaggtgaggccttcaagccgctgaacgaagcccag
gccatggctgcgctggaaaagctcaaggcgtccagctacagcatcgtcaagcgtgaagac
aaacccaccagcagcaagccatcggcaccgttcatcacctccaccctgcaacaggccgcg
agtaaccgcctgggcttcggggtaaagaaaaccatgatgatggcccagcgtctgtacgaa
gccggctacatcacctatatgcgtaccgactccaccaacctttcggtggacgcggtcgcg
atggcgcgtacttacattgaaagcgagttcggcaagaaatacctgccggagaagccgaac
gtctacagcagcaaggaaggcgcacaggaggctcacgaagcgattcgtccttcggacgcc
aacaccgagccaagcaagctcagtggcatggagcgcgacgccgagcgcctctacgagctg
atctggcgccagttcctggcctgccagatgctgccggcgcaatacctgtccaccacggtc
agtgtgggggctggggacttcgagctgcgtgccaagggccgtatcctcaagttcgacggt
tacacccgcgtgatgccgcaaatcgccaagccaggcgatgacgatgtgctgccggacatg
gcccagggcgacacgttgaagctgatcaagctcgacccgtcccagcacttcaccaagcca
ccggcgcgttactcggaagccagcctggtaaaagagatggaaaaacgcggtatcggtcgt
ccttcgacctacgcggcgatcatctccaccatccaggatcgcggctacgtggcgttgcac
aaccgtcgtttctattcggaaaagatgggcgacatcgtcaccgagcgcctgtccgagagc
ttctccaacctgatggactacggctttaccgccggtatggaagagaacctcgatgacgtc
gcccagggcgagcgcgactggaaaaacgtgctggacgagttctacggcgacttcaagaag
aagctcgaagtggccgaaagccctgagagcggcatgcgtgccaaccagccggtgatgacc
gacatcccgtgcctgacctgcggccgcccgatgcagattcgtacggcgtccaccggcgtt
ttcctcggttgctcgggctacagcctgccgccgaaagagcgctgcaaggccaccgtcaac
ctggtgccgggcgatgaaatcgcggctgacgatgagggtgaatccgagtcgctggtactg
cgtggcaagcaccgttgcccgatctgcagcacggcgatggacgcttacctgctggacgag
aagcacaagctgcacatctgcggtaacaacccggattgcaacggctacgagatcgaagaa
ggcacctaccgcatcaagggctatgaaggtccgagcctggaatgcgacaagtgcggcagc
gagatgcagctcaagaccggtcgtttcggcaagttcttcggttgcaccaacccgacgtgc
aagaacacccgcaaactgctgaaaagcggtgacgcggcgccgcctaagatggacccggtg
aagatgcccgaactcaagtgcgagaaggtcaacgacacctacatcctgcgtgacggcgct
tccggcctgttcctggcggccagccagttcccgaaaaaccgcgagacccgtgcaccgttg
gtgctggagatcgtgccgcacaaggatgagatcgatccgaagtaccacttcctgtgtgaa
gcgccgaagaaggatcccgacggtcgtccggccgtgatccgctacagccgcaagaccaag
gagcaatacgtgcagtccgaagtggacggcaagcctaccggctggaaagcgttctacgac
ggtggtaagtggaaggtcgaggacaagcgtcagggcgcttga
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