Pseudomonas fluorescens SBW25: PFLU_2968
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Entry
PFLU_2968 CDS
T00899
Name
(GenBank) Topoisom_I domain-containing protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pfs
Pseudomonas fluorescens SBW25
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfs03032
]
PFLU_2968
03400 DNA repair and recombination proteins [BR:
pfs03400
]
PFLU_2968
Enzymes [BR:
pfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PFLU_2968
DNA replication proteins [BR:
pfs03032
]
Prokaryotic type
DNA Topoisomerases
PFLU_2968
DNA repair and recombination proteins [BR:
pfs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PFLU_2968
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Poty_coat
Motif
Other DBs
NCBI-ProteinID:
CAI2797192
UniProt:
C3KB58
LinkDB
All DBs
Position
1:complement(3240345..3241382)
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AA seq
345 aa
AA seq
DB search
MSDSALPRDLHYVDDTQPGIRRKTVRGKFQYFDPKGVRITDADEIKRLNALAVPPAYTDV
WICADPRGHLQATGRDARGRKQYRYHARWREVRDSDKYARLQEFGNALPTLRKQLEAKIA
EPGFTREKVLATVVMLLDATLIRVGNTQYARDNKSYGLTTLRTRHVDVKGSEIQFQFRGK
SGVEHQISVKDRRLATVVKRCLELPGQNLFQYLDEDGERHTVSSQDVNEYLHSLTGADFT
AKDYRTWAGTAMALAVLRELEWQPESDAKRHVVAMVKDVAKQLGNTPAVCRKCYIHPAVL
EHFSLGELSKLPKPRLRKGLKAEEVALAMFLEQLAADLPKKAKAG
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgtccgactctgcgctgccccgcgacctgcattacgttgacgacacccagcctggcatc
cgtcgcaagacggtgcgcggcaagttccagtatttcgaccccaagggcgtacgcatcacc
gacgccgatgagatcaagcgcctcaacgccctggcggtcccaccggcctacaccgatgtg
tggatctgcgccgacccgcgcggccacctgcaagccaccggccgcgatgcacgtgggcgt
aagcagtaccgctatcacgcgcgttggcgtgaagtgcgcgacagcgacaagtacgctcgg
ctgcaggaattcggcaacgccctgccgacattacgcaaacaattggaagcgaaaatcgcc
gagcccggtttcactcgcgaaaaagtcttggccaccgtggtgatgctgttggacgctacg
ctgatccgcgtcggcaatacccaatatgcgcgggacaacaaatcctacgggctgaccacc
ctgcgcacccgccacgtggatgtgaaaggcagcgagatccagttccagtttcgcggcaag
agtggcgtggagcatcagatcagcgtcaaggatcggcgcctggccacggtggtcaagcgc
tgcctggaattgccggggcagaacctgttccagtacctggacgaagacggcgagcggcac
actgtcagctcccaggacgtgaatgaatacctgcacagcctcaccggtgcggacttcacc
gccaaggactaccgcacctgggccggcacggccatggcgctagcggtgttgcgggaattg
gagtggcagcctgagtccgatgccaagcgacacgtcgtggcgatggtcaaggacgtcgcc
aagcagttgggcaacaccccggcggtgtgccgcaagtgctacatccaccccgccgtactg
gagcatttcagcctgggcgaactctccaagctgcctaagccgcgactgcgcaaagggctc
aaggccgaagaggtcgccttggcgatgttccttgaacaactggcggcggacttgccgaaa
aaagccaaggcgggttag
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