Pseudomonas fluorescens SBW25: PFLU_4506
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Entry
PFLU_4506 CDS
T00899
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD (EC (23S rRNA(m5U1939)-methyltransferase)
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pfs
Pseudomonas fluorescens SBW25
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfs03009
]
PFLU_4506
Enzymes [BR:
pfs01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PFLU_4506
Ribosome biogenesis [BR:
pfs03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PFLU_4506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Cons_hypoth95
MTS
Methyltr_RsmB-F
Methyltransf_23
PCMT
Methyltransf_11
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_15
DREV
Motif
Other DBs
NCBI-ProteinID:
CAI2798680
UniProt:
C3K109
LinkDB
All DBs
Position
1:complement(4972681..4974033)
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AA seq
450 aa
AA seq
DB search
MAKHERGLRFQPTGGSRAPQIPVGKKQRLTIERLANDGRGIVFFEGRTWFVNGALAGEDV
EARVLGTHGKIVEARTERVFKSSELRRPAPCAHFGRCGGCSVQHLPHAEQLALKQRMLAE
QLSRVAGVEPQEWAAPLSGPEFGYRRRARVAVRWDAKAKHLAVGFRAVASQDIVAIDDCP
VLVQALQPIMQRLPNMLRRLSKPQALGHVEVFSGTSIAVLLRHMAPLSEADLHILKEFCT
FHDAQLWLHGEGQPEPVDADAVLGFRLEQWDLELAYRPGDFVQVNAGVNAAMVAQALEWL
APQPDERVLDLFCGLGNFALPLARQVREVVAVEGVQTMVDRAAVNAVSNNLHNAQFFQAD
LSQPLTDAEWAKQGFSAVLLDPPRDGALEVVRKLATLKAKRLVYVSCNPATLARDTVELV
KQGYRLKRAGILDMFPQTAHVEAMALFEAG
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcacgagagaggcctgcgcttccagccgacgggcggcagccgggccccgcag
attccggtaggcaagaaacaacgcttgaccatcgagcgcctggccaatgacggccgcggc
atcgtgttctttgaaggccgcacctggtttgtgaacggcgcactggccggcgaagacgtg
gaagcgcgcgtgctgggcacccacggcaaaatcgtcgaggcgcgcaccgaacgggtgttc
aagtccagcgaactccggcgtccggcgccgtgcgcgcacttcggccgctgcggcggttgc
agcgtgcagcacttgccccacgccgaacaacttgccctgaaacagcgcatgctcgccgag
caactgtcccgtgtggccggtgtcgaaccgcaagagtgggccgcacccttaagtgggccg
gaattcggctaccgtcgccgcgcccgtgtggccgtgcgttgggacgccaaggcgaagcat
ctggcagtcggtttccgcgccgtggccagccaggacatcgtcgccattgacgattgcccg
gtactggtacaggccttgcaaccgatcatgcagcgtctgcccaacatgctccgccgcctg
agcaaacctcaggcgctggggcatgtggaagtgttcagtgggacgtccatcgccgtgttg
ctgcggcatatggcgccgctgtccgaagcggacctgcacattttgaaagaattctgcacc
tttcatgatgcccagctgtggctgcatggcgagggtcagccggaaccggtcgacgccgat
gcggttctggggtttcgattggaacagtgggatctggaactggcttaccggcctggagac
tttgtccaagtcaacgccggggtcaacgcggcgatggtcgcccaggccctggaatggctg
gcgccccaacccgatgagcgggtgttggacctgttttgcggcctgggcaatttcgccctg
ccgctcgctcgccaagtgcgcgaagtggtggcggtggaaggcgtacagaccatggtggac
cgggcggccgtcaacgccgtcagcaacaatttgcataatgcgcagttttttcaggccgat
ttgtctcagcctttgaccgacgcggaatgggccaaacagggcttttctgcggtactcttg
gacccacctcgtgacggtgccctggaggttgtgcgcaagctcgcgaccctcaaggccaag
cgtctggtgtatgtgtcctgcaacccggccacgctggcgcgggacacggttgagttggtc
aagcaaggctaccggctaaaacgtgccgggatcctcgacatgtttccgcaaaccgcgcat
gtcgaggccatggcgttatttgaagcgggctag
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