Pseudomonas fluorescens SBW25: PFLU_4714
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Entry
PFLU_4714 CDS
T00899
Symbol
rne
Name
(GenBank) Ribonuclease E (RNase E) (EC
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pfs
Pseudomonas fluorescens SBW25
Pathway
pfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFLU_4714 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfs03019
]
PFLU_4714 (rne)
03009 Ribosome biogenesis [BR:
pfs03009
]
PFLU_4714 (rne)
Enzymes [BR:
pfs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PFLU_4714 (rne)
Messenger RNA biogenesis [BR:
pfs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PFLU_4714 (rne)
Ribosome biogenesis [BR:
pfs03009
]
Prokaryotic type
rRNA processing factors
PFLU_4714 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
CAI2798879
UniProt:
C3K0P3
LinkDB
All DBs
Position
1:5188519..5191746
Genome browser
AA seq
1075 aa
AA seq
DB search
MCAERRFRQPGNRRYNMKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKG
RITRIEPSLEAAFVDFGSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEK
EERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGL
IVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDI
GEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPS
GGSIVIDPTEALVSIDINSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDF
IDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRC
NGTGIIRDVESLSLAILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTR
ARIVILPNDHLETPHFEVQRLRDDSPEAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQE
AAVKTAPARANAPVPTEVAAPVAAPAALPEPSLFKGLVKSLVSLFATKEEPVAPVVVEKP
ATERPARNEERRNGRQQSRNRNGRRDEERKPREERAPREERAPREERAPREAREETPTVA
REERAPREERAPRTPRAPREDRKPRGEREERVRELREPLDAAPAVAAEAVSEERPARQPR
EERAPREERQPRAPREERQPRAEQAAAASEEEVLTGEEQPQEDGQEGAEGDRPRRRSRGQ
RRRSNRRERQRDANGNVIEGSEETGENAEAATSEPTGAELAAGLAVTAAVASSVISAPAE
AQAHEQAERATAAVEETVIAETPVAETPIVEAPAVEASVAEAPVVEAPAVEATTPIEAPV
VPEVEVVPEVEVAPVQEAQPEVEVAAVEEAPAIEPQPVTETVVEAPVVEAAPEVREVREE
QTAFQWTAEPAAPVEAPEPAPVVEDAPAPVAEVVVAEPAPVVEPAPVVEPAPVVEAPVVA
EVAAPVVEAAPVSALTENGRAPNDPREVRRRRKEAEAAAAAAAAQEAEHESKPLV
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
gtgtgtgccgaacgccgtttccggcagcccggaaaccgacggtacaacatgaaaagaatg
ctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagatggccaacgcctc
tacgacctggacatcgaatccggtgcacgcgagcagaagaaggccaatatctataaaggc
cgtattactcgcatcgaaccaagccttgaggctgcctttgtcgatttcggctccgagcgc
cacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaagcgcctgaaggc
cgcgtgaacatcaaggacgtcctgagcgaaggccaggaagtcatcgttcaggtcgaaaaa
gaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctggcaggccgttac
ctggtcctgatgccgaacaacccacgtgccggcggtatttcccgtcgcatcgaaggcgaa
gagcgcaacgaactgcgtgaagcgctgaacggcctgatcgcaccggccgacatgggcctg
atcgttcgcactgccggcctgggccgcagcagcgaagaaatgcagtgggacctcgactac
ctgctgcaactatggaccgccatcaaagaagcgtccctggatcgttccgcgccattcctg
atctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctgcgccaggacatc
ggcgaagtgctgatcgacagcgttgaagcacaggacgaagccctgaccttcatccgccag
gtcatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtcccgctgttcaac
cgtttccagatcgaaagccagatcgagaccgccttccagcgcgtggtcgaactgccttcc
ggtggctccattgtgatcgacccgaccgaagccctggtgtccatcgacatcaactcggcg
cgcgccactaaaggtagcgacatcgaagaaaccgccctgcagaccaacctggaagcggct
gaagaaatcgcccgccagctgcgcctgcgcgacatcggcggcctgatcgtgatcgacttc
atcgacatgacccccgccaagaaccagcgcgccgtggaagagaaagtccgcgaatgcctg
gaagctgaccgtgcccgcgtacaggttggccgcatctcgcgcttcggcctgctggaaatg
tcccgtcaacgcctgcgtccgtccctgggcgaaagcagcggcatcgtctgcccgcgttgc
aatggcaccggcatcatccgtgacgtcgagtcgctgtccctggcgatcctgcgcctgatc
gaagaagaagccctgaaagaccgcaccgccgaagtccgcgcacaagtgccgatcccggtc
gccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgcacccgt
gcccgtatcgtgatcctgccgaacgatcacctcgagacgccgcacttcgaagtgcagcgc
ctgcgtgatgacagcccggaagcccacagcggccagtccagctatgaaatcgccgctgcc
gccgccgaagtggaagaagtccagccggccgctgcgacccgcaccctggttcgccaggaa
gccgccgtgaagaccgcccctgcccgcgccaacgcaccggtgccgactgaagtggctgca
ccggttgccgcaccggccgccctgcctgagccaagcctgttcaagggcctggtgaagtcg
ctggtcagcctgttcgcgaccaaggaagagcccgttgctccggttgtggttgaaaaacct
gccaccgaacgcccggcgcgcaacgaagagcgtcgcaacggtcgccagcagagccgtaac
cgtaacggtcgccgtgacgaagaacgcaagcctcgcgaagaacgtgcaccgcgtgaagaa
cgcgcgccacgtgaagagcgtgcgcctcgcgaagcccgtgaagaaaccccgaccgtagcc
cgtgaagaacgcgcaccgcgtgaagagcgtgcaccacgcaccccacgtgctccgcgtgaa
gatcgcaagccacgtggcgagcgtgaagaacgtgtgcgtgaactgcgcgagccgctggat
gccgctccggccgtcgccgccgaagccgtcagcgaagaacgcccggctcgccagccgcgt
gaagaacgcgcgccacgtgaagaacgccaacctcgcgctccgcgtgaagagcgtcaacca
cgtgccgagcaagcggctgccgccagcgaagaagaagtactgaccggcgaagagcaaccg
caggaagacggtcaggaaggcgccgaaggcgatcgtccacgccgccgctcccgtggccag
cgtcgtcgcagcaaccgtcgtgagcgtcagcgtgatgccaacggcaacgtgatcgaaggc
tcggaagagaccggcgaaaacgcagaagccgctaccagcgaaccgacgggcgccgaactg
gctgccggcctggctgttaccgctgccgttgccagctcggtcatcagcgcacctgctgaa
gcccaggcccacgagcaggctgagcgcgctactgctgctgtcgaagagaccgtcatcgca
gaaacacctgttgccgagacgccaatcgttgaagcacctgctgttgaagcatcggttgct
gaagcgccagttgtagaagcgccggctgtcgaagccaccaccccaatcgaagcgccggtt
gtgccggaagtggaagttgttccggaagtagaagttgctccggttcaagaagcccagcca
gaagttgaagtggcagcggttgaagaagcaccggcgattgaacctcagccagtgactgaa
acagtcgttgaagctccggttgtcgaggcggctccagaagttcgtgaagttcgtgaagaa
cagaccgccttccaatggactgccgagcctgccgcgccggttgaagcgccagaacctgcc
ccagtggtagaagacgcgccggcaccggttgccgaagtcgtggttgccgagccagccccc
gtggttgagcctgctccggtcgttgaacctgcacccgtggttgaagcgccggtggttgcc
gaagttgccgcgccagtggttgaagcagcaccggtcagtgccctgaccgaaaacggccgt
gccccgaacgacccacgtgaagtgcgtcgtcgtcgcaaggaagctgaagccgctgcagcg
gctgccgcagcacaggaagcagagcacgagagcaaacctctcgtctga
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