Pseudomonas fluorescens SBW25: PFLU_5048
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Entry
PFLU_5048 CDS
T00899
Name
(GenBank) Exodeoxyribonuclease 7 large subunit (EC (Exodeoxyribonuclease VII large subunit) (Exonuclease VII large subunit)
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
pfs
Pseudomonas fluorescens SBW25
Pathway
pfs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PFLU_5048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfs03400
]
PFLU_5048
Enzymes [BR:
pfs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
PFLU_5048
DNA repair and recombination proteins [BR:
pfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
PFLU_5048
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
DUF4807
Motif
Other DBs
NCBI-ProteinID:
CAI2799195
UniProt:
A0AA35I361
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All DBs
Position
1:5546413..5547792
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AA seq
459 aa
AA seq
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MIKDPFARLGLDREILTVSQLNGRARVLLEDVFTNIWVEGEISNLARPASGHVYFTLKDS
GAQVRCALFRNNAARVRQALKDGLAVKVRGKVSLFEGRGDYQLILDTVEPAGDGALRLAF
DALKEKLSAEGLFSAERKVPLPAHPRRIGIISSPTGAVIRDIISVFRRRAPNIELTLIPT
AVQGREAIPQIVRALKLADARGFDALILARGGGSLEDLWCFNEEAVARAVDACITPIVSA
VGHETDVSISDFVADVRAPTPSAAAELLAPDASHLVRQVENLHRRLVMLMRNRLSHDRLR
LEGMARRLRHPGERLRQQAQRLDDLDMRLRRAFERSLNTRRERLIRLETRLAGQHPGRQL
ALLRQRLESLAERLPRAMREGLKARRLQLQSQVQTLHVVSPLATLGRGYSILLDERGQAI
RTAAQTHTGQRLTARLGEGQLQVRVEDNHLTPVTLSLLD
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgattaaagacccgtttgcccgactgggcctggaccgcgaaattctgactgtcagccag
ctcaacggccgcgcgcgggtgttgctggaagacgtgttcaccaatatctgggtagaaggc
gagatctccaacctcgcccgcccggcctccggccacgtgtatttcacccttaaggacagt
ggcgcccaagtgcgttgcgcgctgttccgcaataacgccgcacgggtgcgccaggcattg
aaagatggcctggccgtgaaagtgcgcggcaaggtctcgctgttcgagggccgtggcgac
taccagttgatcctcgataccgtcgagccagccggtgatggggcgttgcgcttggcgttc
gatgcgttgaaggaaaagctcagcgccgaaggcttgttcagtgccgagcgcaaggtaccg
ttgcctgcgcaccctaggcgcattggtattatcagctcgccgactggcgcggtgattcgc
gacatcatcagcgtgttccgccgtcgggcgccgaacattgaattgacactgatccccacc
gccgtgcaaggccgcgaagccatccctcagattgtgcgcgcgttgaaactggcggatgcc
cgtggcttcgacgcgctgatcctggcccgtggcggcggctcactggaagacctctggtgc
ttcaacgaggaagcggtggcccgtgcggtggacgcctgcatcacgcccatcgtcagcgct
gtcgggcatgagaccgatgtgtccatcagcgatttcgtggcggacgtgcgcgcccctacc
ccctccgccgcggctgaactgctcgcgccagacgccagccacctggtgcgccaggtcgaa
aacctgcaccgccgcctggtgatgttgatgcgcaaccgcctgagccatgaccgcctgcgc
ctggaaggcatggcccggcgcctgcgtcaccccggcgaacgcctgcgccaacaggcccag
cgcctggacgacctggacatgcgcctgcgtcgcgcgtttgagcgcagcctcaatacccgg
cgcgaacggctgatccgcctggaaacccgcctcgccggccaacacccgggccgtcaactg
gccctgctgcgccaacgcctggagagcctcgccgaacgcctgcctcgcgccatgcgcgaa
ggcctcaaggcgcggcgcctgcagctgcaaagccaggtgcagacgctgcacgtggtcagc
ccgctggcgaccctgggccgtggctacagcatcctgctggacgagcgtggccaggccatt
cgcactgccgcgcagacccacaccggacagcgcctgaccgcacgcctcggtgagggccaa
ttgcaagtgcgggtggaagacaaccacctgacacccgtcaccctttcgttattggattga
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