KEGG   Pseudomonas fluorescens SBW25: PFLU_5473
Entry
PFLU_5473         CDS       T00899                                 
Symbol
ribD
Name
(GenBank) Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (EC (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC (HTP reductase)]
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
pfs  Pseudomonas fluorescens SBW25
Pathway
pfs00740  Riboflavin metabolism
pfs01100  Metabolic pathways
pfs01110  Biosynthesis of secondary metabolites
pfs01240  Biosynthesis of cofactors
pfs02024  Quorum sensing
Module
pfs_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:pfs00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    PFLU_5473 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    PFLU_5473 (ribD)
Enzymes [BR:pfs01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     PFLU_5473 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     PFLU_5473 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam Inv-AAD Phage_Gp84
Other DBs
NCBI-ProteinID: CAI2799612
UniProt: C3K2S2
LinkDB
Position
1:complement(6002715..6003824)
AA seq 369 aa
MLDAHYMARALELARKGLYTTHPNPRVGCVIVRDGQVVGEGWHVRTGEPHAEVHALRAAG
DKARGATAYVTLEPCSHYGHTPPCADALVSAGLARVVAAMQDPNPEVAGRGMQRLAQAGI
DVRSGVLESEARALNRGFLKRMEQGLPFVRVKLAMSLDGRTAMASGESQWITGPAARAAV
QRLRAEASVVLTGADTVLADGARLTVRAAELGLDDATTALAMSRPPLRVLIDGRLRVPLN
APFFKAGPALVITCVTAENQFPRGPECLVVPGVEGQVDLRSALVALAARGVNDVLVEAGP
SLAGAFAQQGLVDEYVIFVAGKFLGSAARPLLDWPLDKLADAPQLKITEMRAVGDDWRVT
AIPVPAASV
NT seq 1110 nt   +upstreamnt  +downstreamnt
gtgctcgacgcccattacatggcccgcgccctcgaactggcgcgcaagggtctgtacacc
acccaccccaaccctcgggtgggctgcgtgattgtgcgcgatgggcaggtcgtcggcgaa
ggctggcacgtgcgcaccggcgagccccatgccgaagttcatgccctgcgcgctgccggt
gacaaggcgcgcggcgccaccgcctatgtgaccctcgaaccttgcagccactatgggcac
accccgccgtgcgccgatgcgctggtgagtgccgggttggcgcgggtggtcgcggcgatg
caggaccctaacccggaagtcgccgggcgcggcatgcagcgcctggcccaggccgggatc
gacgtgcgcagcggtgtgttggaaagtgaagcgcgggccctcaacagagggttcctcaag
cgcatggagcagggcctgccgtttgtgcgggtcaagctggcgatgagcctggacggccgc
accgcgatggccagcggcgaaagccaatggatcaccggccccgccgcccgcgctgccgta
cagcgcctgcgcgccgaggccagcgtggtgctgaccggcgccgatacggtgctggccgac
ggtgcacgcctgaccgtgcgcgccgccgaactcggcctggatgacgccaccaccgccctg
gccatgtcgcgcccgccattgcgcgtgctgatcgacggccgcctgcgagtgccgctcaac
gcgccgttcttcaaggctggcccggcgttggtcatcacctgcgtgaccgccgaaaatcag
ttcccccgtggccctgagtgcctggtggtgccgggtgtcgaaggccaggtcgacttgcgc
tcggcactggtcgcgctggctgcgcgtggcgtcaacgacgtgctggtggaagctggtcca
agcctggcgggtgcgtttgcccaacaaggcctggtagacgaatacgtgatattcgtcgca
ggcaagttcctcggctccgccgcccggcctttgctggactggccgcttgataaactggcc
gacgccccccaactcaagatcactgaaatgcgcgctgtaggcgacgactggcgggtcact
gccatccctgtgccagcagcgagcgtataa

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