Pseudomonas fluorescens SBW25: PFLU_5533
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Entry
PFLU_5533 CDS
T00899
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pfs
Pseudomonas fluorescens SBW25
Pathway
pfs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PFLU_5533 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfs03021
]
PFLU_5533 (rpoC)
03400 DNA repair and recombination proteins [BR:
pfs03400
]
PFLU_5533 (rpoC)
Enzymes [BR:
pfs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PFLU_5533 (rpoC)
Transcription machinery [BR:
pfs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PFLU_5533 (rpoC)
DNA repair and recombination proteins [BR:
pfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PFLU_5533 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF3150
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
CAI2799672
UniProt:
A0AA35I492
LinkDB
All DBs
Position
1:complement(6053476..6057675)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGGSVTNTRIVDTTVGRALLYQVVPKGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKAQIIGAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEEIIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDYGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLGAEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtattggattggcatcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgtggcgttatctgcgagaagtgcggcgttgaagttgcactggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcttcgccggttgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgagcgcgttctctat
ttcgagagctatgtcgttatcgatccaggcatgaccacccttgaaaaaggtcagctgctg
aacgacgagcagtacttcgaagcgctggaagagtttggcgacgatttcgatgcccgcatg
ggtgccgaagctgtccgcgaactgctgcacgctatcgacctggagcacgagattggccgc
ctgcgcgaagaaattccgcaaaccaactcggaaaccaagatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacttgccagagtggatggtgctgacc
gttctgccggttctgccgccagacctgcgtccgctggtaccgttggacggtggtcgtttt
gcgacgtccgaccttaacgacctgtaccgccgcgtgatcaaccgtaacaaccgcttgaag
cgcctgcttgatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagctgtcgatgccttgctcgacaacggtcgtcgtggccgcgctatcaccggttccaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgcctaagaagatggcacttgagctgttcaagccattc
atcttcggcaagctggaaatgcgcggtctcgcgaccaccatcaaagcggccaagaaaatg
gtcgagcgcgaactgccagaggtttgggacgttctcgctgaagtgattcgcgaacacccg
gttctcctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacactggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgacgcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtattcgctgatctgcaggaagttgaccgtgtgttccgtgccggc
gaagccgccctgcacgccaaggtcaaagtgcggatcaacgaaaccgtcaatgaccgtgat
ggcggcagcgtgaccaacacccgtatcgtcgacaccactgtcggccgtgcgctgttgtat
caagttgtgccaaaaggtctgtcgtacgacgttgttaacttgccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtttgaaagagaccgtgatcttc
gctgaccagttgatgtacacaggttttgcttattcgaccatttccggcgtttcgatcggt
gttaacgacttcgttatcccggatgaaaaagcccagatcatcggtgctgctaccgatgaa
gtgaaagagatcgaaagccagtacgcatccggcctggtaacccagggcgagaagtacaac
aaagtgatcgacctttggtccaaggccaacgacgaagtgtcgaaggcgatgatggctaac
ctttcgaaagaaaaggttatcgaccgtcatggtgtagaagtcgatcaagagtcgttcaac
tcgatgtacatgatggccgactcgggcgcacggggttctgctgcgcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggttctatcatcgaaacgccgatcact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctcgactcacggtgctcgt
aaaggtctggcggataccgcgttgaaaaccgctaactccggttacctgactcgccgtctg
gtagacgttgcacaagacttggttgtgactgaagtcgactgcggtaccgagcacggtctg
ctgatgactccgcacatcgaaggcggcgacgttgtagaaccgttgggtgagcgcgtactg
ggtcgagtaatcgcccgtgacgtattcaagccaggtaccgaggaaattattgttcctgca
ggcaccctggtagacgagaagtgggtcgagttcatcgaactcaacagcatcgacgaagtg
atcgttcgctcgccgatcagctgcgaaacccgctacggcatctgcgccaagtgctacggt
cgtgacttggctcgtggtcaccaagtgaacatcggtgaagcggtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgcg
gcaagccggacctctgcagccgacagcgttcaggtgaagaatggcggtaccgtacgtctg
cacaacctgaaacacgttgagcgagtggatggccacctggttgctgtgtcccgttccggt
gagctggcgatcgctgatgactacggtcgtgagcgtgagcgctacaagctgccgtacggt
gctgtgatttcggttaaagaaggtgacaaggtcgacgctggcgcaatcgtggctaagtgg
gacccgcacactcacccaatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtactcgacgccaaagatcgtccagctgccggcaaagatatccgtcctgccgtgaagatg
gtcgacgacaacggcaaggatctgttgctgccaggcactgacgtaatcgctcagtacttc
ctgccagccaacgccttggtcggtgtggcggatggtgcgaagatcgcgatcggtgatgtt
atcgcgcgtatcccgcaagaaacttcgaaaacccgcgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagctcgtcgtccgaaagaagcgtcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaaaggcaagcgccgtctggttattaccccgaac
gacggtagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtgttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccaagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgttaacgagatccaggacgtt
taccgcctgcaaggcgtgaagatcaacgataagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgaaatcgctgagtccggcgattccagtttcatcaagggcgaccagatg
gaactgactcacgtactggtagagaacgaacgtctgggcgcggaagacaagtttgtctcc
aagttcactcgtgtgttgctgggtatcaccaaggcgtcgttgtccactgagtcgttcatc
tcggcggcctccttccaggagaccactcgcgtactgaccgaagcagcggtaaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtggtcgtgggtcgtctgatcccggcaggt
accggtttggcttaccacagcgagcgcaagcgccgccgtgatgctgacaagccgttgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcactgaactcaagcggtaactga
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integrated database retrieval system
