Pseudomonas fluorescens SBW25: PFLU_5592
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Entry
PFLU_5592 CDS
T00899
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor (sigma-70)
KO
K03086
RNA polymerase primary sigma factor
Organism
pfs
Pseudomonas fluorescens SBW25
Pathway
pfs02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PFLU_5592 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfs03021
]
PFLU_5592 (rpoD)
Transcription machinery [BR:
pfs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PFLU_5592 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
CAI2799731
UniProt:
C3K341
LinkDB
All DBs
Position
1:6124128..6125978
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AA seq
616 aa
AA seq
DB search
MSGKAQQQSRIKELIVLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEA
APDKDSLMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAAE
VPPPVDAKAAKADDDTEDDDAEASGDDEDEVESGPDPVIAAQRFGAVSDQMEITRKALKK
HGRSNKQAIAELLALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARM
PRTDFLRQFPGNEVDESWTDALAKGKAKYAEAIGRLQPDIIRCQQKLTALETETGLTIAE
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcgttctcggtcgtgag
cagggttacctgacttacgcggaggtcaacgaccacctgcctgaggatatttcagatcca
gagcaggtggaagacatcatccgcatgattaacgacatggggatcaacgtattcgaagct
gcgccagataaggattcccttatgctggcggacgccgataccgacgaggctgccgctgaa
gaagctgctgccgcgctggctgctgtggagaccgatatcggtcgtaccaccgaccctgtg
cgcatgtatatgcgtgaaatgggtaccgtcgagctgctgacacgcgaaggcgaaattgaa
atcgccaagcgtatcgaagagggtatccgtgaagtgatgggcgcaattgcgcacttcccc
ggcacggttgaccacattctctccgagtacacccgcgtcaccaccgaaggtggccgcctg
tccgacgtgctgagtggctacatcgacccggacgacggcattgcgccgcctgccgccgaa
gtgccgccgcctgtggatgccaaggctgcgaaagccgacgacgacaccgaagacgacgac
gctgaagccagcggcgacgatgaagatgaagtcgaaagcggtccagacccggtcatcgct
gcacagcgtttcggtgcggtttccgatcaaatggaaatcacccgcaaggccctgaaaaag
cacggtcgctccaataagcaggcaattgccgagctgctggcgctggctgagctgttcatg
ccaatcaagctggtaccgaagcaattcgaaggcctggttgagcgtgttcgcagtgccctg
gagcgtttgcgtgcacaagagcgtgcgatcatgcagctctgtgtccgtgatgcgcgcatg
ccgcgtaccgacttcctgcgccaattccctggcaacgaagtagacgaaagctggaccgac
gcactggccaagggcaaggcgaaatacgccgaagccattggtcgcctgcagccggacatc
attcgctgccagcagaagctgaccgcgctcgagaccgaaaccggtctgacgattgccgag
atcaaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaa
gagatggtcgaagcgaacttgcgtctggtgatctccatcgccaagaagtacaccaaccgt
ggcctgcaattcctcgatctgatccaggaaggcaacatcggcttgatgaaggctgtggac
aagttcgaataccgtcgcgggtacaagttctcgacatatgccacctggtggattcgtcag
gcgatcactcgctcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgtatttcccggcagatgttgcaggaaatgggtcgcgaa
ccgaccccggaagagctgggcgaacgcatggaaatgccagaggataagatccgtaaggta
ttgaagatcgctaaagagccgatctccatggaaaccccgattggtgatgacgaagactcc
cacctgggtgacttcatcgaagactcgaccatgcagtcgccaatcgatgtcgccaccgtt
gagagccttaaagaagcgactcgcgacgtactgtccggcctcactgcccgtgaagccaag
gtactgcgcatgcgtttcggcatcgacatgaataccgaccacacccttgaggaagtcggt
aagcagtttgacgtgacccgtgagcggatccgtcagatcgaagccaaggcgttgcgcaag
ttgcgccacccgacgcgaagcgagcatctgcgctccttcctcgacgagtga
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