Pseudomonas fluorescens SBW25: PFLU_5691
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Entry
PFLU_5691 CDS
T00899
Symbol
dbpA
Name
(GenBank) ATP-independent RNA helicase
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
pfs
Pseudomonas fluorescens SBW25
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfs03009
]
PFLU_5691 (dbpA)
Enzymes [BR:
pfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PFLU_5691 (dbpA)
Ribosome biogenesis [BR:
pfs03009
]
Prokaryotic type
rRNA helicases
PFLU_5691 (dbpA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
DIP2311-like_C
Motif
Other DBs
NCBI-ProteinID:
CAI2799828
UniProt:
C3K3D8
LinkDB
All DBs
Position
1:6239997..6241382
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AA seq
461 aa
AA seq
DB search
MTTIATAFNTLPLSAAMLANLDSLGYVEMTQIQAQSLPVILKGLDLIAQAKTGSGKTAAF
GIGLLNPINPRYFGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSLGPQIA
SLEHGAHVIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIISKTPPR
RQTLLFSATYPVSIKQLASKFMRAPQQVKAEAFHSDDQIEQRFYEISPEERMEAVTKVLA
HFRPASCVAFCFTKQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVA
TDVAARGLDIDSLDMVINVELARDSEIHIHRVGRTGRAGETGIAISLVAPSEAHRAQAIE
QLQKSPLNWDQLDNLKPQSGGPLLPQMSTLCIAAGRKDKVRPGDILGALTGEAGIPGAQV
GKIAIFDFQAFVAVERGIAKQALQRLNDGKIKGRSLRVRIL
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
gtgactaccatcgccaccgcttttaatactttgcccctgtccgccgccatgctggctaac
ctcgactcgctgggttatgtcgagatgacgcagatccaggcgcaaagcttgccggtgatc
ctcaaagggctggacctgattgcgcaggccaagaccggcagcggcaagaccgctgcgttc
ggcatcggcctgttgaacccgatcaacccgcgctacttcggctgccaggccctggtcatg
tgcccgacccgtgagctggccgaccaggtcgccaaggaaatccgtcgcctggcccgcgcc
gaagacaacatcaaggtgctgaccctgtgcggcggcgtgtccctcggcccgcagatcgcc
tccctggaacacggtgcccacgtcatcgtcggcacgccgggccgtatccagcagcacctg
cgcaaaggttcgctggtgctggatggccttaacacgctgattctcgacgaagccgaccgc
atgctcgacatgggcttctacgacgccatcgaagacatcatcagcaagaccccgccgcgc
cgccagaccctgctgttctcggccacctacccggtgagcatcaaacagctggcctcgaag
ttcatgcgcgcgccgcagcaagtgaaggccgaagcgttccactccgatgaccagatcgag
cagcgtttctacgagatctcgccggaagagcgcatggaagccgtgaccaaggtcctggcg
cacttccgcccggcctcctgcgtcgccttctgcttcaccaagcagcaagtgcaggaaacc
gtggatcacctgaccgccaagggtatttccgccgtcggcctgcatggtgacctggaacag
cgcgaccgtgaccaggtactggcgatgttcgccaaccgcagcacgtccgtgctggtggcc
accgacgtcgccgcccgtggcttggacatcgactcgctggacatggtgatcaacgtcgaa
ctggcccgcgattcggaaatccacatccaccgcgtcggccgtaccggtcgtgccggtgag
accgggattgccatcagcctggtcgccccgtctgaagcacaccgcgcccaggccatcgag
caactgcagaagtcgccgctgaactgggaccaactggacaacctcaagccgcaaagcggt
ggcccgctgctgccgcagatgagcaccttgtgcatcgctgccgggcgtaaagacaaggtt
cgtccgggcgatatcctcggcgccttgaccggtgaagccggtatccccggtgcccaggtc
ggcaagatcgcgatctttgacttccaggcgttcgtggccgtggaacgcgggatcgccaag
caggcgttgcagcgtttgaacgacggcaagatcaaaggccggtcgttgcgcgtgcggatc
ctgtaa
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