Pseudomonas fluorescens SBW25: PFLU_5900
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Entry
PFLU_5900 CDS
T00899
Symbol
rho
Name
(GenBank) Transcription termination factor Rho (EC (ATP-dependent helicase Rho)
KO
K03628
transcription termination factor Rho
Organism
pfs
Pseudomonas fluorescens SBW25
Pathway
pfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFLU_5900 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfs03021
]
PFLU_5900 (rho)
03019 Messenger RNA biogenesis [BR:
pfs03019
]
PFLU_5900 (rho)
Transcription machinery [BR:
pfs03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PFLU_5900 (rho)
Messenger RNA biogenesis [BR:
pfs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PFLU_5900 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
CAI2800030
LinkDB
All DBs
Position
1:complement(6456898..6458157)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLQLAEEMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLIDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgacctgctccaactggccgaagaa
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctgaaa
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctccgctctgcagacgcctcctatctcgccggcccagacgatatctac
gtctcgccgagccagatccgtcgcttcaacttgcgcaccggcgacaccattgttggcaag
atccgccctccgaaggaaggcgagcgttatttcgccctgctcaaggtcgacacgatcaac
ttcgatcgtcccgagaacgcgaaaaacaagattctcttcgagaacttgacgccgctgttc
ccgaccgtgcgcatgaagatggaagccggtaacggttccaccgaagacttgaccggccgt
gtcatcgacctgtgtgccccgatcggcaaaggccaacgtggcctgatcgtcgcaccgcca
aaggccggtaagaccatcatgctgcagaacattgcagcgaacatcgcacgtaacaatcct
gaagttcacctgatcgtgctgttgatcgatgagcgtccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctccacgttcgatgagccgccaacccgccacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgaacacaagaaggacgtg
gtgatcctgctcgactccatcacccgtctggcccgcgcctataacaccgtaatcccgagc
tccggcaaggtattgaccggtggtgtcgatgcccacgccctggagaaaccgaagcgtttc
ttcggcgccgcgcggaacattgaggaaggcggctcgctgaccattatcgccaccgcactg
gttgaaaccggttcgaagatggacgaagtgatctacgaagagttcaagggtactggcaac
atggaactgcccctggaccgtcgcatcgcggaaaaacgcgtgttcccggcgatcaacatc
aaccgttccggtacccgccgcgaagagttgctgactgccgatgacgaactgcagcgtatg
tggatcctgcgcaagctgctgcacccgatggacgaagtcgctgccatcgagttcttgatc
gacaagctgaaaaccaccaagaccaacgatgagttcttcttgtcgatgaagcgtaagtaa
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