Pseudomonas fluorescens SBW25: PFLU_6130
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Entry
PFLU_6130 CDS
T00899
Name
(GenBank) Putative iron-related RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pfs
Pseudomonas fluorescens SBW25
Pathway
pfs02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PFLU_6130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfs03021
]
PFLU_6130
Transcription machinery [BR:
pfs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PFLU_6130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
GerE
HTH_23
HTH_20
HTH_40
HTH_11
Trp_repressor
HTH_24
HTH_7
TnsD
Annexin
RWP-RK
HTH_Tnp_4
Imm71
Motif
Other DBs
NCBI-ProteinID:
CAI2800256
UniProt:
C3K1F8
LinkDB
All DBs
Position
1:6713810..6714328
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AA seq
172 aa
AA seq
DB search
MSCPMSPSSHTAAVQNIYEQHHSWLHGWLKGKLHNACDAADVAHDTFVRILGGRHAAQIV
EPRDYLATIARGLVIDRYRRHAIEQAYKQTLAERPEANAISEEDKAIILETLVAVDKALS
ALGERARRIFMLSQIEGLTYQQIADQLQVSLTTVKKHMIRALTECSLIMASL
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
ttgtcatgccctatgtccccttcctcacacacggctgcggtccagaacatctatgagcag
caccattcctggctgcatgggtggctcaaaggtaagttgcataacgcctgcgatgcggcc
gatgtggcgcacgatacgttcgtgcgcatcctgggcgggcggcatgcggcgcagatcgtt
gaaccgcgtgactatttggcgaccatcgccagaggcctggtgattgatcgttaccgtcgg
cacgccatcgaacaggcttacaagcagaccttggccgaacggcctgaagcgaatgccatc
agcgaagaagataaagccatcatcctcgagacgttagtggctgtggataaagccttgtct
gcactcggtgagcgggcccggcggattttcatgctgtcgcagatcgaggggctgacttat
caacagattgccgatcagctccaggtgtcactgaccacggtgaagaagcatatgatccgt
gcattgactgaatgctcgctgatcatggccagcttgtaa
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