Pelosinus fermentans: JBW_00886
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Entry
JBW_00886 CDS
T03813
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pft
Pelosinus fermentans
Pathway
pft03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pft00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JBW_00886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pft03019
]
JBW_00886
03016 Transfer RNA biogenesis [BR:
pft03016
]
JBW_00886
Enzymes [BR:
pft01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JBW_00886
Messenger RNA biogenesis [BR:
pft03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JBW_00886
Transfer RNA biogenesis [BR:
pft03016
]
Prokaryotic type
tRNA degradation factors
JBW_00886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
S1CSD-TOTE-2
S1_RRP5
RNase_II_C_S1
Rrp44_S1
Cap4_nuclease
Motif
Other DBs
NCBI-ProteinID:
AJQ26238
UniProt:
I9DJZ5
LinkDB
All DBs
Position
1096215..1098536
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AA seq
773 aa
AA seq
DB search
MIVLKDKILEFMRTEAYKPLTAEELAEHMELKGTELSELWKVIEELESNADIIKTRYDKY
GVPERMNLVVGKLSASNKGYGFVIPEKVRTPNETDIFIPPDGMMSAMHHDRVVVRVHTQS
GQGKSRDGEIIRIVKRANTRIVGTYEASRNFGFVTPDDLRLGQDIFIPKDGQNIVPSGAK
VVVEVTKWPEKKRSAEGKIMEVLGNTGDSGIEILSIIKRHNLPIDFPAEVAQAAENAPDT
ISEDEISGRRDLRHLPIVTIDGEDAKDLDDGVYVERLKNGNYLLGVYIADVSYYVRENTV
LDKEASERGTSVYLVDRVLPMLPRRLSNGICSLNAGEDRLAMSAHMEIDHKGQVVKYELF
PSVIRVQKRFSYTVVRKILVEHDEELIHEHKELLGQLENMERLCRILRERRMRRGAIDFD
FPELKVKLDETGKPIEIIKRVRSLAESIIEEFMLVANETVAEHMHKLKVPFVFRVHEEPD
SEKMVKLNNLLHNFGQSLSKVDEVQPAALQKILNHISGRPEERIISTVMLRSLKQARYEA
QNLGHFGLAATYYTHFTSPIRRYPDLIVHRILRETFNSGDISTKRKAKLAAMLPEIALHS
SERERAAAEAERETVSLKTVEYMAQFVGEHFDGIINGVTAFGIFVELDNGVEGLVRVSSM
EDDYYQYVEEQYSLIGERSHKIYRLGDAVKVILTRVSPEERNIDFVLESNSAWIERSINR
RPSGGRPQGNGVKSEGSGNGRRTVSAANKSSKTRKAVVSRAKPKPRRNKPKKK
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgatagtattaaaagacaaaatcttagagttcatgagaacggaagcatataaacctttg
accgcggaagaattagccgagcatatggagctcaaagggacagaattaagtgaactatgg
aaggttattgaagagctagaaagtaatgcagatattattaaaactcgctatgacaaatac
ggtgtacctgaacgtatgaatttggtagtagggaagttaagcgccagcaataagggatat
ggctttgtgattcctgaaaaagttagaacacctaatgaaacagatattttcattcctccc
gacgggatgatgagtgccatgcatcatgatcgggtagtcgttcgtgtccacacccagagt
gggcagggcaaatcccgggatggggaaatcatccgcattgtaaaacgggccaatacccgt
attgtaggaacttatgaagccagccgcaattttggttttgtaactcctgatgaccttcgc
ttaggtcaggatatttttattccgaaggatggacaaaatatcgtcccgagtggtgcaaaa
gtagtagtagaagttaccaaatggccagagaaaaaacggagtgctgaaggcaagatcatg
gaagtcttggggaatacgggagatagcgggattgaaattctctccattatcaaaaggcac
aatttgcctatcgattttcccgctgaagttgcgcaggctgccgagaatgctccagatacc
attagtgaagatgaaatctccggtcggcgtgacctgcggcatttgcccattgtaaccatt
gatggagaagatgccaaggatttggatgatggggtatatgtcgaacgtttgaagaatggc
aattatcttctgggagtctacattgcagatgtcagttattatgttcgtgaaaatacggta
ctggataaagaagccagtgagcggggaaccagcgtatatttggtagaccgggtattgccc
atgctgcctcgtcgcttgtcaaacggtatctgcagtctcaatgccggggaagatcgtctg
gccatgtcggctcatatggaaattgaccataagggacaagtggttaagtatgaattattc
cccagcgtcataagagtacagaaacgtttttcttatacggtagtacgtaaaattttggtg
gaacatgatgaagaattaattcatgaacataaggaattgcttggacaattagaaaatatg
gaacgactgtgccgaatcctgcgggaacgaaggatgcgccgcggtgccatcgattttgac
ttcccggaattaaaagtgaaattagatgaaacgggaaaacccattgagattataaaacga
gtccgcagtctagccgaatccatcattgaagaatttatgctggtggcaaatgaaactgtg
gctgaacatatgcataagttaaaggttccttttgttttccgcgtccatgaagaaccggat
tcggaaaaaatggtaaaattaaataatctattgcataattttgggcagagtttatccaag
gtggatgaagtacagcccgctgccttgcagaaaattttaaatcatatttcaggacgtcca
gaagaaaggattatcagtacggttatgctgcgctcattaaaacaagctcgctatgaagca
cagaacctgggacactttggattggctgcaacctactatactcattttacatctcccata
cgacgttatccggatttaattgtacatcgcattctgcgggagacctttaattcgggagat
atatcaacaaaacgcaaagcaaaactagcagccatgctcccagagattgccctgcattcc
tctgaaagagagcgggcggctgcagaagcagaacgggaaactgtttctctgaaaaccgta
gaatatatggcgcagtttgtaggagagcattttgacggaatcattaacggcgttacggct
tttgggatttttgtggagctggataatggagtagagggcttagtacgtgtatccagtatg
gaagatgactattatcaatatgtggaagaacaatattcattaattggtgagcgcagtcat
aagatatatcgtctaggtgatgcagtgaaagtcatcctcaccagagtcagcccagaagag
cgcaatatcgactttgtcttagaatccaatagcgcctggattgaacgatcgataaatcga
agaccgagcggaggaagaccccaaggaaatggagtgaagagtgaaggctctggcaatggt
cgaagaactgtctctgccgcgaataagagcagtaagacgaggaaggctgtggtaagccgt
gccaaaccgaaaccaagaagaaataagcccaagaagaagtaa
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