Pelosinus fermentans: JBW_02314
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Entry
JBW_02314 CDS
T03813
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pft
Pelosinus fermentans
Pathway
pft03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pft00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JBW_02314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pft03019
]
JBW_02314
03009 Ribosome biogenesis [BR:
pft03009
]
JBW_02314
Enzymes [BR:
pft01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JBW_02314
Messenger RNA biogenesis [BR:
pft03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JBW_02314
Ribosome biogenesis [BR:
pft03009
]
Prokaryotic type
rRNA helicases
JBW_02314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
Helicase_RecD
CMS1
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AJQ27660
UniProt:
I8TVM4
LinkDB
All DBs
Position
complement(2597740..2599320)
Genome browser
AA seq
526 aa
AA seq
DB search
MNDTQLFGTIPLSKKLLSAIAEMGFEEPSPIQNQTIPLVLEGHDVIGQAQTGTGKTAAFG
IPAIEKIADSRQIQVLVLTPTRELAIQVSEELAKIGKFKRIKTLPIYGGQPIDRQIKALR
MGVHVVIGTPGRLLDHIRRKTIKLDAVKTLILDEADEMLDMGFVEDIETIMQEVPVEGRQ
TLLFSATMPGPIATLARKYMNNPKTISINREQLTVPLIDQIYYETREKLEALCRVLDVET
TGKSIIFCRTKRGVDDLVVSLQGRGYMADGLHGDLSQAQRDRVMKKFRDGKLELLIATDV
AARGIDIDDITHVFNYDIPQDNEAYVHRIGRTGRAGKKGVAITFINPREYRQLKLIEKLT
KSRIVRKQLPSAADILDRQREIIKNRLVQTIEQGKFEVYQDIIVDLAADYDPIEIAAAAL
KLAQEGFKEKFIVEEEKPDFTNTGAEAGMVRLFINAGRAQKIRPEDIVRTIAEGADISGN
TIGVINIYEKFTFVEVPMDVAERVIAVLHKSSIKGYKINVEPAKSR
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgatactcaattatttggtactattccattaagcaaaaaactactttcagcaatt
gctgaaatgggttttgaagaaccctcaccgattcaaaaccaaaccattcctcttgtactt
gaaggtcacgacgttattggacaggcacaaacaggtacaggtaaaaccgctgcatttggt
atacctgctatagaaaaaattgctgatagtcgtcaaatacaagtattggtgcttactcca
actcgtgaacttgcaattcaagtatcagaagagctggcaaagataggtaagttcaaaaga
ataaaaaccttacctatttatggtggacaaccaattgaccgacaaattaaggctctacgt
atgggcgtacatgttgtaattggtactccaggtagacttttagatcacattcgccggaaa
acaataaaacttgacgctgtaaaaacacttattcttgacgaagctgatgaaatgcttgat
atgggctttgttgaagatattgaaaccattatgcaagaagttcctgttgaaggaagacaa
acactcttattttctgctactatgccaggaccaattgctactttagcaagaaaatatatg
aataatcccaaaacgatttctatcaatagagagcagcttacagtacctcttattgaccaa
atttattatgaaacacgagaaaaattagaagcattatgtcgcgttttagatgtagagaca
acaggtaaatcgattatcttttgccgtactaaaagaggtgtagatgacttggttgtatca
ctacaaggacgcggctatatggctgatggtttacacggtgatctaagtcaagcacaacgt
gatagagttatgaaaaaattccgtgatggaaaacttgaattattaatagccacagatgtt
gctgctcgcggtatagatattgatgatatcacacatgtcttcaattacgatattcctcaa
gataatgaagcatatgtacatcgcattggacgtacaggacgtgctggtaaaaaaggtgtg
gcaatcacctttattaatcctcgtgaataccgccaacttaaactgattgagaaactaact
aaatcacgtattgtacgcaagcaactaccttcagctgctgacattttagatcgtcaacgg
gaaatcattaagaatcgtttagtgcaaacaattgaacagggaaagtttgaagtctatcag
gacattattgtggatttagccgctgattatgacccaatagagattgctgctgctgcttta
aaacttgcgcaagaaggatttaaagaaaagtttatcgttgaagaagaaaaacctgacttt
actaacactggcgctgaagcaggtatggtacgtttgtttattaatgctggtagagcacag
aaaattcgccctgaagatattgtacgcacgatagcagagggagccgacatctctggaaat
acaattggtgtaatcaatatttatgaaaaatttacttttgtagaagtaccaatggatgta
gcagagcgtgttatcgccgtactacataaaagctcgattaaaggatataagattaatgtt
gagcctgctaaaagcagataa
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