Pelosinus fermentans: JBW_02322
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Entry
JBW_02322 CDS
T03813
Name
(GenBank) Ribocuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pft
Pelosinus fermentans
Pathway
pft03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pft00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JBW_02322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pft03019
]
JBW_02322
Messenger RNA biogenesis [BR:
pft03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JBW_02322
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AJQ27668
UniProt:
I8TZG4
LinkDB
All DBs
Position
complement(2607635..2609299)
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AA seq
554 aa
AA seq
DB search
MVKTQQKIQIIPLGGLGEIGKNMTVVRYGDDIIVIDAGLMFPEDDMLGIDLVIPDISYLL
ENRDLVRGIILTHGHEDHIGALPYVLKQLNVPVYGTRLTLGILEGRLKENNVPLTNLISV
KAGDQIEVGPFKIGFIRISHSIADAVALSIKTPVGTIVHTGDFKFDQTPVDGKVTDFHKL
AELGDQGVLVMLADSTNAEHPGYTMSEKSVGVTFDEMFYSANGRIIIASFSSNVHRVQQA
IDTACKYNRKVAVLGRSMINVVTISSELGYLNIPEGVLIDIDQINNYPASGVVIITTGSQ
GEPMSALTRMAMSDHRKVDIVPGDTIIISATPIPGNEKLVSRTIDYLLRQGAEVLYERTS
GIHVSGHASQEELKMMHNLIRPKFFIPVHGEYRHLVKHSKLAQELGMAKDHIFIAENGQV
LEFTSEKGSVTGKVSSGIVLIDGLGVGDVGNIVLRDRRQLSQEGILIVVITMDKQGGCVV
AGPDIVSRGFVYVRESEQLMDEAKNKVRQTLDKCESNNVTEWAMIKSSVRDTLGKYLYEK
TRRRPMILPIIMEV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttggtaaaaacacaacaaaaaattcaaattatccctttaggcggattgggagaaattggc
aagaacatgactgtagttcgttatggagacgatattattgtcattgatgctggtctaatg
tttccggaagatgatatgctcggaattgacttagtgattccagatatatcgtatctacta
gaaaatcgcgatttagtacgggggataatacttactcatggccatgaagatcatattggt
gcattaccatatgttctgaagcaacttaacgtacctgtctacggtacaaggctaacattg
ggaatacttgaaggcagattaaaagaaaataatgttccattaactaatttaatttctgtc
aaagcaggtgaccaaattgaagttggaccttttaaaattggttttattcgcattagtcac
agtattgcagatgctgtagccctttccattaaaactcccgttggtacgattgtacatact
ggagattttaaatttgaccaaacgccagttgatggtaaggttacggattttcataaattg
gcagaattgggtgatcagggagtactcgttatgcttgcagacagtacgaatgctgagcac
ccaggatatacgatgagtgaaaaatcagttggcgttacatttgatgagatgttctatagt
gctaatggacgaatcatcattgcgagtttttcttccaatgtacatcgcgtgcaacaagct
attgatactgcctgtaaatataatcgtaaggtagcagtcttggggcgtagtatgattaat
gtggttacgatttcatctgaattaggctatcttaatattccagaaggtgtactcattgat
attgatcaaattaataattatccagcatcaggcgtggttatcatcacaaccggcagtcaa
ggtgaacctatgtcagcattaactagaatggcaatgtctgatcatcgtaaagttgatatc
gtacctggtgacaccattattatttctgccacgccaattccgggtaatgaaaagttagta
tctcgtactattgactatttattacggcagggtgcagaagtgctttatgagagaacttct
ggtattcatgtttcaggacacgctagccaggaagaattaaaaatgatgcacaatttaatt
cgtcctaaatttttcattccagtacatggtgaatatcgtcatttagttaagcattcaaag
ttagcccaagagcttggcatggcaaaagatcatattttcattgctgagaatgggcaggta
ctagagtttacttctgaaaaaggcagtgttacaggaaaagtatcttctggcattgtgtta
attgatggactaggtgttggcgatgtcggtaatattgtactacgagatcgccgacagctt
tcccaagaggggattttgattgttgttattacaatggacaagcaaggtggctgtgttgtc
gcaggtcccgatattgtatctcgtggttttgtttatgtgagggaatccgagcaattaatg
gatgaagctaagaacaaagtaagacaaacactggataaatgcgaatcgaacaatgttacc
gaatgggctatgattaaatcaagcgttcgtgatacattgggtaaatatttatatgaaaaa
acacgtcgtcgtcctatgatattaccaattattatggaagtctaa
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