Pelosinus fermentans: JBW_03469
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Entry
JBW_03469 CDS
T03813
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pft
Pelosinus fermentans
Pathway
pft03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pft00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JBW_03469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pft03019
]
JBW_03469
03009 Ribosome biogenesis [BR:
pft03009
]
JBW_03469
Enzymes [BR:
pft01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JBW_03469
Messenger RNA biogenesis [BR:
pft03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JBW_03469
Ribosome biogenesis [BR:
pft03009
]
Prokaryotic type
rRNA helicases
JBW_03469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SecA_DEAD
CMS1
NOT1_connector
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJQ28808
UniProt:
I9NSH7
LinkDB
All DBs
Position
complement(3862407..3863750)
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AA seq
447 aa
AA seq
DB search
MQKDFTALGIRREIGAILAENGITKPTEIQVQAIPAIMSGKDVVGQSQTGTGKTLAFILP
ILEKIEISKPIVQALIITPTRELALQITREVAKLADQLGIQVLSVYGGQDVDRQIKKLKG
GAQIVIGTPGRLMDHLRRETIQLENVTKLVLDEADQMLHMGFLEDVEELVRQTSNKRQTM
LFSATMPSKIRGLADRYMRKPLDIRIQTKNITLDEIKQIMVEVPESEKIAKLSSMIDEYR
PYLAIVFCHTKKRAIAVNMALSQKGYETDELHGELSQPKREQVMKRFREAKIQILVATDI
AARGLDVEGVTHIFNYDIPHDVDSYIHRIGRTGRAGQAGMAITLIDPHEQPYVRLIEQGI
RAAIEKHKVNDQKVVSTDKRRLFNAKGEEGKAGVEKKEKKRAFVFGKTDKKKTGNHSGAN
SRSRRKPKENEKGEQQVQPGREKRKNR
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaggattttacagccctaggtattcgacgggaaataggtgcgattctagctgag
aatggtattacaaagcccacagaaatacaagttcaggctattcctgcgatcatgtccggc
aaggatgttgttgggcagtctcagacaggaacaggcaaaacattagcctttatactgccg
attttagaaaaaattgaaatcagcaaacccatcgtacaagcattaattattacaccaacc
cgggaattagccctccagattacccgagaagtggcaaagttagctgatcaattaggaata
caggtgttatctgtatatggtggacaagatgtggatcgacaaattaagaagttaaaaggc
ggcgcccaaatcgtcattggtactccagggcgattaatggatcatctgcggcgagaaacg
attcagcttgaaaatgttacgaaactcgttttggatgaagcggatcaaatgctgcatatg
ggttttttggaggatgtggaggaattagttcgacaaacttcgaataaacgccaaactatg
ctgttttcagcaacgatgccttctaaaattcgcggattagccgaccgttacatgcgaaaa
ccattagatatacgcatacaaacaaaaaatattacattagatgaaatcaaacagattatg
gtagaagtacctgagtccgaaaaaattgccaagctaagtagtatgattgatgaatatcga
ccctatttagcaattgttttttgtcataccaaaaagcgtgcaatagccgtaaatatggct
cttagtcaaaagggttatgaaacagatgaacttcatggagaattgtcccagccgaaacgg
gaacaggttatgaagcgttttcgtgaagctaaaatacaaattctagtggctactgatatt
gctgccagaggtctggatgtagaaggtgttactcatatatttaattacgatatacctcat
gatgtagacagctacattcatcgtatcggacgtacagggcgtgcagggcaagctggtatg
gccattacactgattgatcctcacgagcagccttatgtaagattgatcgagcaaggtatt
cgcgcagcaatcgaaaagcataaagtcaatgatcaaaaagtggttagtaccgataaaaga
agactgtttaatgcaaaaggtgaagagggaaaagcaggagtagaaaaaaaagagaaaaaa
agagccttcgtttttggaaaaacggataagaaaaaaacgggaaaccacagcggagcaaat
tcaagaagccgccgcaagccaaaagagaatgaaaaaggtgaacagcaggttcagccagga
agagaaaaaagaaaaaatagataa
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