Pelosinus fermentans: JBW_03890
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Entry
JBW_03890 CDS
T03813
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pft
Pelosinus fermentans
Pathway
pft03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pft00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JBW_03890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pft03021
]
JBW_03890
03400 DNA repair and recombination proteins [BR:
pft03400
]
JBW_03890
Enzymes [BR:
pft01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JBW_03890
Transcription machinery [BR:
pft03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JBW_03890
DNA repair and recombination proteins [BR:
pft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JBW_03890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AJQ29227
UniProt:
I9DIE8
LinkDB
All DBs
Position
complement(4320887..4324837)
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNNFDSMRIGLASPEQIRKWSFGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
HCGKYKRIRYKGIVCDRCGVEVTRSKVRRDRMGHIQLAAPVSHIWYFKGIPSRMGLILDI
SPRSLEKVLYFASYIVLDPGETPLMKRQLLTENEYRDYRDKYGSSFKVGMGAEAVKKLLE
ELDLEKISKELKQELKEVSGQRKIRAIRRLEVTEAFRKSGNRPDWMIMDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKE
MALELFKPFVMKKLVNAGHAHNIKSAKRMVERVRPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLSEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQSEARMLMLAAHNIL
STKDGKPVVTPTQDMVLGAYYLTMEKEGDIGEGKMMCDINEALLAYHQKELSLHAIIKVR
FPKYGLVTTTMGRLIFNESLPEEIRYFFQKDGEWHLGIMMDKKELGKLVAETYRQFGNSK
TAVVIDNVKRLGYAFACRAGMTVAIADINIPPEKKEILATTEGRVDTVDKQYRRGLITED
ERYKKTIELWTKATDDVTLAMMNNLDRFNPIYMMANSGARGNIQQIRQLAGMRGLMADPS
GRIIDRPIKANFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE
EDCDVVGINLIRERARLAKSSTGAIEVLRDTLLGRVLAEDVLDPKTTDILIPRSTVLADD
NLRIIGEHGVPEIMVRGVSTTTEEDINASASNETIVLGAPEEKMRELLKNAMVREMLGKN
TTNAIKDSQGVEIVAAETPLTEEAIEAVLVSDVREVKVRNNSIRGIEVEAITEGTGVIES
LKDRIVGRFIAEDIVDPKTGEVIVKINDTISEPLADRIVAIREKVSIRSVLTCKSQYGVC
IKCYGRNLASGHAVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEEL
FEARKPKRQAIITEIDGVATVDTKEVKGMRKITVVPAAGEERIYPIPYGARIIVRDGQQI
IAGDRLTEGSVNPHDILRVCGIQATQRYLVYEVQKVYKSQGVEINDKHIEVIVRQMLHKV
KTEESGDTELLPGEYIDTNTFEEENAKAIEAGGEPSVARPILLGITKASLATDSFLSAAS
FQETTRVLTEAAIKGKIDPLLGLKENVIIGKLIPAGTGMSRYRNIKLTYAKSVKVE
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
ttgttagatgtaaacaattttgattctatgaggattggattggcttctccggagcaaatc
cgcaaatggtcatttggtgaggtaaaaaaaccggagacaatcaattaccgtactctaaaa
cctgagcgtgatggtttattttgtgaaaaaatatttggaccaactcgtgactgggagtgc
cattgcggtaaatacaaacgtattcgctataaagggattgtttgtgatcgttgtggcgtg
gaagtaactcgctccaaagtacgtcgagatcgaatggggcatatacaattagccgcacct
gtatctcatatttggtatttcaaaggtattccaagccgtatggggctgatattagatata
tcgcctcgctccttggaaaaagtattatactttgcttcctatatcgtactggatcctggt
gaaacaccgctgatgaaacgtcaattgttgacggaaaatgagtatcgggattatcgcgat
aaatatggcagttcctttaaagtcggcatgggtgcagaagctgttaaaaaacttttggaa
gagcttgatttagaaaaaatatctaaagaactaaaacaagagttgaaggaagtcagcgga
cagcgtaaaattagagcgatccgccgcttggaagtaacagaagccttccgtaaatcgggt
aatcgtcctgattggatgattatggatgttgtaccagttattccgcctgaactcaggcca
atggtacaacttgatggtggccgttttgctacttctgatttaaatgatttgtatcgcaga
gtcattaaccgtaataatcgtttgaagcgattgttagatcttggtgctcccgatattatt
gtgcgtaatgaaaaacgtatgctgcaagaagctgtagatgctctgattgacaatggtcgt
cgtggacgcccggtaactggtcctggtaaccgtcctcttaaatcattaagtgatatgctc
aaaggtaaacaaggtcgtttccgtcagaatctcttaggtaagcgtgtcgattactctgga
cgttcagttatcgttgttggacctgaactgaaattgcatcaatgcggtttgccaaaagaa
atggcattagaattgtttaaaccttttgttatgaaaaaactagtgaatgctggtcatgcc
cataacattaagagtgctaaacgtatggtcgaacgagtgcgcccggaagtttgggatgta
ttggaagaagttattaaagagcatccagtgcttttgaatcgtgctcctaccttacataga
ttaggtattcaggcttttgaaccagtgctatctgaaggtcgcgctataaaacttcatcct
ctagtatgtacagcatataacgcggattttgatggtgaccaaatggctgtccatgtgcct
ttatcggcagaagcccagtcagaagctcgtatgttgatgttagctgctcataatatctta
tcaactaaagacggtaaaccggtagtaacaccgacccaagatatggttctaggagcatat
tatcttaccatggaaaaagagggcgatatcggtgaaggtaagatgatgtgtgacattaac
gaagcattacttgcttatcatcaaaaagagttgtcccttcatgccataattaaagtacgt
tttccaaagtatggtttggtaactactaccatggggcgtttgattttcaacgaaagctta
cctgaagaaatccgctatttcttccaaaaagatggcgaatggcatttaggtattatgatg
gataaaaaagagcttggcaaattggtagctgagacgtatcgccaatttggtaactctaaa
acggctgtagtaattgataatgttaaaagattaggttatgcttttgcttgtcgtgcaggt
atgactgtagccattgctgatatcaatataccgcctgaaaagaaggaaatcttagcgact
actgagggccgagttgatactgttgataaacaatatcgccgtggtttgattacggaagat
gaacgatataagaaaaccattgaattatggacaaaagcaacagatgatgttactttagcc
atgatgaataatctggatcgctttaacccgatttatatgatggctaactctggtgctcgt
ggtaacatccaacagattcgtcagttggcaggtatgcgtgggctcatggctgatccatca
ggccggattattgaccgtccgataaaggcaaacttccgtgaaggtttgacggttcttgag
tattttatttctactcatggtgctcgtaaaggtttggctgatactgcacttagaacggcc
gattctggttatttgacacgtcgtttggttgacgtatcccaagatgttattgttcgtgaa
gaggactgtgatgttgtaggaattaacctgatccgtgaacgggcgcgattggcgaaatcc
agtacaggtgcaattgaggtgcttagagatacactgttaggaagagtcttagccgaagat
gttcttgatccgaaaacaacagacatcttgattcctcgttctacagttcttgctgatgat
aacttgcgtattattggtgaacatggagtaccggaaattatggtgcgcggtgtatcaaca
actacggaagaagatattaatgcttctgcatccaatgagactattgtattaggtgcaccg
gaagaaaaaatgcgtgaacttctgaaaaatgctatggtacgtgaaatgctgggtaaaaac
actaccaatgctattaaagacagccaaggcgtagaaattgttgctgccgagacacctctt
accgaagaagcgattgaagctgttttagtaagtgatgtgcgggaagtaaaagtacgcaac
aacagtattaggggcattgaggttgaggcgattacagaaggaactggcgtgattgaatcg
ctgaaagatcgtattgtgggtcgttttattgccgaagatattgttgatcctaagactggc
gaagtcattgtaaaaatcaatgatacgattagtgaaccactggcagatcgcattgtagcc
atccgtgagaaagtatcgattcgttctgtacttacatgtaaatcacaatatggtgtatgt
attaaatgttacggccggaatctagcatctggtcatgctgtagatgtaggggaagctgta
ggtatcattgcagcccaatctatcggagaacctgggacacagcttactatgcgtactttc
catacaggcggtgttgccggcgatgatattacacaaggtttgccaagggttgaagagttg
tttgaagctcgtaaaccaaaacgtcaagccattattacagaaatcgatggtgtagctact
gttgacacaaaagaagtaaaaggtatgcgtaagattacagtagtacctgccgcaggtgag
gagcgtatatatcctattccttatggtgcacgtattattgttcgtgatggacagcaaatt
attgcaggtgaccgtctaacagaaggttctgtaaatccacatgatattttacgtgtatgc
ggtattcaagctacgcagcgatatttagtatatgaagtgcaaaaagtatacaaatctcag
ggtgttgaaattaatgataaacacatcgaggtaattgtaaggcagatgctccataaagtg
aaaacggaggaatctggtgatactgaacttttaccgggtgaatatattgatacgaatacc
tttgaagaagaaaatgccaaggcaattgaagcaggcggtgagccatctgtggcacgtcct
atcctacttggtattacaaaagcatcattggcgacagactccttcttatcagcagcatcc
ttccaggaaacaactcgtgtacttaccgaggctgcgattaaaggtaaaattgatccgttg
cttggccttaaagaaaatgttattatcggtaagctaataccagcaggtactggtatgagt
cgttatcgcaacattaagctgacgtatgcaaaaagtgtaaaagtagagtaa
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integrated database retrieval system
