Pelosinus fermentans: JBW_03977
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Entry
JBW_03977 CDS
T03813
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pft
Pelosinus fermentans
Pathway
pft03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pft00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JBW_03977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pft03400
]
JBW_03977
Enzymes [BR:
pft01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JBW_03977
DNA repair and recombination proteins [BR:
pft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JBW_03977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
NBD94
MFD_D3
AAA_16
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AJQ29314
UniProt:
I8TZW6
LinkDB
All DBs
Position
complement(4429236..4432505)
Genome browser
AA seq
1089 aa
AA seq
DB search
MNKLFEIMKQDPGMKRVIAVSQLTVSQSQIYGVTGVQKSALLAAAYQSAPKPTVIVTGNH
ESVEQLRADFATLLPNTLVLELPALDIITFTAVAKGVELAARRMDILGRLIRGENIIVLA
TPEAAMQRVLPREHFENNRITISNGSEMIREDLLESLVRFGYERVDQVEGLGQFSARGGI
VDIFPISSKVPIRLELFGDEVDSLREFDLASQRSMHAVEQVDILPLSEIEKSGTPTVFLS
YLPAISTIVFDETARIREQMGKLVKENPEIKKSTFTWSDIVTVAVHYNVLYISLMLQKIP
YTQPNEIISITAKGIVPFHRQMDMLIAELKNCQEHKSYPIIFMSNQEKAVSLQHTLTEEG
IPAVFSDVIHTLTEGTVLITVGLLSAGFELPQAHLLVIAEKDIMGRQKKKPRPRVGKGQQ
IAYFRDIKIGDYVVHINHGIGKYVGVETLIVGKVHKDYLHIRYAGEDKLYVPTDQVHLLQ
KYIGSEGDAPRLNKMGGSDWLKAKGKAEKAVADMAKELLEIYAQRKVASGFAFDPDTPWQ
KEFEDAFPYEETPDQLSAIIEIKGDMEKSQPMDRLLCGDVGFGKTEVAIRAAYKAVMGGK
QVAILVPTTVLAQQHYQTISARFSGFGPVVDVISRFRNAREQRATVEALASGQVDVLIGT
HRILQSDVIFKNIGLLIVDEEQRFGVKQKEKLKKWSAGIDVLTLSATPIPRTLHMSLVGA
RDMSIIETPPEERFPVQSYVVEYNEEVMRDAIKRELKRGGQVYFVYNRVQTIDKMYRRLA
EMLPDAKIRVAHGQMPEEMLEQAMLDFYEGTDDVLLCTSIIENGLDVPNANTIIVYDADH
FGLSQLYQMRGRVGRSHRMAFAYFTYRQDKVLTEVAEKRLQAIKEFAELGAGFKIAMRDL
EIRGAGNLLGSQQHGHIVSVGFEMYCRLLDEAVQQLKTGQTLETPVEPVLEFNVDAYISG
DYISDAMHKIEIYQRIAACRNEKHISDLVDELIDRFGEPPSCVLNLLEVVKIKNFSRAIG
IRSVIQQPNYIEVAFIDKPNVKPEQIMALKEAFPARVMIYPEGIRLKTVQISNDKLLNWL
VKVFTTLVS
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaattatttgaaattatgaaacaagatcctggaatgaagcgggttattgccgtt
tcgcaattgactgtgagtcaaagtcaaatctatggcgtaacaggtgtgcaaaaaagtgca
ttattagcagccgcgtatcagtctgctcctaagcctactgtgattgttactggtaatcat
gagtcggtagaacagctgcgcgcagattttgccacgttgcttcccaatacccttgttctc
gaactgccggctttagatattattacatttacagcggttgcaaaaggtgttgagttagca
gctcggcgcatggatatcttggggcgtctgatccgaggggaaaatataatcgttttagcc
acgcctgaggcagcaatgcaaagagtactgccccgagaacactttgaaaataatcgcatt
acaattagtaacggatcagaaatgatacgtgaagacttgctggagtcgctggtacgtttt
ggttacgaacgggtggatcaagtagaggggctcggtcagtttagtgccagaggcggtatt
gttgatattttccccatcagcagtaaagtcccgattcgtttagagttatttggtgatgag
gtggattccctgcgggagtttgatcttgcctcacagcgatctatgcacgcggtagagcaa
gtggatattcttcctttatctgagattgaaaaaagtggaactccaacggtgtttttatct
tatttaccagcgatttcaaccattgtgtttgacgagactgctcgcatccgcgaacagatg
ggcaaactagtgaaggaaaatccagagattaagaaaagcacctttacgtggtcagatata
gtaacggtggcagtgcattacaatgtgttatatatttccttgatgctgcaaaagattcct
tatacccagcctaatgaaattattagtattacagccaaaggcattgttccttttcatcgt
caaatggatatgctgattgctgaattaaaaaattgccaggagcataagtcttatcctatc
atttttatgtccaatcaagagaaggccgtatcgctgcaacataccttgacggaggaaggt
attcctgccgttttttctgatgtcatccatactctgaccgaaggtactgtattaataaca
gtcggactactctcagcaggctttgaactgcctcaagcccatctgttagtaattgcagaa
aaggatattatgggccgccagaagaaaaaacctcgccccagagtagggaaaggtcaacaa
atcgcttattttcgtgatatcaagattggcgattatgtagtacatatcaatcatgggatt
ggcaaatatgtaggtgtagaaactctgattgtaggaaaggtacataaggattatctgcat
attcgttatgcgggggaagacaaactctatgtccctacggatcaggtacatttattgcaa
aagtatattggttctgaaggtgatgcacctcgtttaaataaaatgggtggcagtgattgg
ctaaaggcaaagggcaaggcagaaaaagcagtagcagatatggcgaaagaattactggag
atctatgcacaaagaaaagttgcatccggttttgcctttgatccggatacgccttggcaa
aaagagtttgaggatgcttttccttatgaggaaacacccgaccagctcagtgccattatc
gaaattaagggcgatatggaaaaaagccagcctatggatcgtttattatgcggtgatgtg
ggatttggcaaaacagaggtggctattcgcgctgcttataaagctgtcatgggcggtaaa
caagttgcgatacttgtaccgacaactgtgttagctcagcagcattatcagacgattagt
gctcgcttttctggctttggtccagtagtagatgtaattagccgctttaggaatgcaaga
gagcagcgagctactgttgaggcactagccagtggacaggtagatgtactaattggtacc
catcgtattttacaatcagatgttatatttaaaaatattggactgctgattgtcgatgaa
gaacagcgctttggtgtaaagcagaaagaaaaattaaaaaaatggagtgcggggattgat
gtattgacattaagtgcgactcccattcctcgtaccttgcatatgtcattagtcggtgca
agagatatgagtattattgagactccgccagaagaacgattccccgtccaaagctatgta
gtagaatacaatgaagaagtgatgcgtgatgcaattaagcgggaattaaagcgaggcggt
caggtatactttgtctataatcgagtacagactattgataaaatgtaccgccgcttagca
gagatgctgcccgatgctaaaattcgtgtggctcatggacaaatgccggaggaaatgtta
gaacaagctatgcttgatttctatgaaggcactgatgatgtattattatgtacaagtatc
attgaaaatggtcttgatgtgccaaatgcgaatacgattattgtatatgatgctgatcat
tttggtttgtctcagttatatcaaatgcgagggcgggtaggacgatcccatcgtatggct
tttgcgtattttacctaccgccaggataaagtactgacagaggttgcagaaaagcggctg
caggcaataaaagaatttgcagaattaggagccggttttaaaattgctatgcgtgattta
gaaatcaggggagctggtaatttattagggtcccagcagcatggacatattgtaagcgta
ggttttgaaatgtactgtcgtttactggatgaagccgtacagcagttaaagacagggcag
acgttagaaacgcctgttgaacctgtgctggaatttaatgtggatgcctatataagtggc
gactatattagtgatgccatgcataaaattgaaatataccagcggattgctgcctgcaga
aatgaaaaacatatttccgatcttgtggatgaattaattgatcgttttggggaaccgcct
agttgtgtattaaatttgctcgaagtggtgaaaattaaaaatttctccagggccattggt
attcgttctgtgattcaacagcccaattatatagaagtagcatttattgataaaccaaat
gttaaacctgagcagatcatggcattgaaagaagcatttcctgctcgtgttatgatttat
cctgaaggtattcgactcaagaccgtacaaattagcaatgataaattactgaattggcta
gtcaaagtatttacaactttggtttcctaa
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