Pelosinus fermentans: JBW_04111
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Entry
JBW_04111 CDS
T03813
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pft
Pelosinus fermentans
Pathway
pft03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pft00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JBW_04111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pft03019
]
JBW_04111
03400 DNA repair and recombination proteins [BR:
pft03400
]
JBW_04111
Enzymes [BR:
pft01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JBW_04111
Messenger RNA biogenesis [BR:
pft03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JBW_04111
DNA repair and recombination proteins [BR:
pft03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JBW_04111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AJQ29444
UniProt:
I9NVL6
LinkDB
All DBs
Position
4562515..4564638
Genome browser
AA seq
707 aa
AA seq
DB search
MLKAALKILKQHYGYTTFRPGQEKIITSLLGNKDTLAIMPTGAGKSLCFQIPALLLPGVT
LVVSPLISLMKDQVDALNGVGIPATFINSSLTLSQVNERIYNAKCGRYKIIYIAPERLES
DSFQAAIKVLTISLLAIDEAHCVSQWGHDFRPSYRAVGSFIASLPNRPIIGAFTATATTD
VTQDIITLLALKNPDVYMTGFDRENLSFTVIRGENKQDFTLKYITANKEQSGIIYAATRK
EVDNLYSLLYKKGYSVGKYHAGLPDKERQHYQEQFIYDNISIMVATNAFGMGIDKSNVRY
VIHYNMPKNMEAYYQEAGRAGRDGEPSECMLLFGAQDPLLQRYLIEQTTFDTDRKTNELS
KLQTMVDYCHTPECLRKFILNYFGETSDITECANCSNCKDDNELTDITLDAQKIFSCVMR
VKERYGTTLIASVLKGSKDKKVLQLGFDSLSTYGLLKNYTLPEIRDAINRLIATDYLMLT
DSEYPVVKLAPKGVAVLKNQTKVWQKVPKRTQKITADNSLFSLLRSLRKTIADREQIPPY
LVFADSTLKEMSEYCPTSYDALLTIKGVGESKRKRYGDEFLEVLQQYALANNIQSSNLSI
ESKEAAVKVQESPSHVISLELYQKGHSLEEISQMRKLKSLTIQDHLVRCYQEGHPVNWDA
LIPPQYEKLILSKIAQLGAERLKILKDALPEEIDYAAIKAVLCKHNR
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaagccgccctaaaaattttaaagcaacactatggttatacaacctttcgtcct
ggtcaggagaaaatcatcaccagcctattaggcaataaagataccttagccatcatgccc
acaggcgctggtaaatccctgtgttttcaaatccccgccctcttactgccaggtgttacc
cttgttgtctcacccttgatttctttaatgaaagaccaggttgacgcattaaacggggtg
ggaattcctgctacctttattaatagctccctcaccctctcccaggtcaatgaacgtatt
tacaatgcaaaatgcggtcgctacaaaatcatctatatcgctccagagcgcttagaatcg
gatagttttcaagctgccatcaaggtccttaccatctctttattagccattgatgaggcc
cactgtgtctcacaatggggacatgattttcgtccaagctatcgggccgttggatctttt
attgcctcactgcccaaccgtcccattattggtgcctttactgcaaccgctactacagat
gtaacacaagacattattaccttattagccttaaaaaatcctgatgtgtatatgactggt
tttgatcgtgaaaacctgtcctttaccgttattcgcggtgaaaacaagcaagactttacc
cttaaatatattaccgccaacaaagaacaatccggaattatttatgcggctacccgtaaa
gaagtagataatctttatagcctattatacaaaaaaggttactctgtaggcaaatatcat
gctggactgcctgataaggaacgccagcactaccaagaacaattcatctatgacaatatc
agtatcatggtcgctactaatgcctttggtatggggattgataaatccaatgtgcgctat
gtgattcattacaatatgcccaaaaacatggaagcctattaccaagaagcagggcgtgcg
ggacgagacggagaaccaagcgaatgcatgctgctgtttggcgcccaagatcctttatta
caacgatatctgatcgagcaaacaacatttgataccgatcggaaaaccaatgaacttagc
aaactgcaaacgatggtagattattgtcataccccagaatgcctgcgaaaattcatctta
aattattttggtgagacaagtgatataacagaatgcgccaattgcagcaattgtaaggat
gacaatgaacttacggatattacattagacgcccaaaagattttttcctgcgtcatgcga
gttaaagaacgttatggcacgactttaattgccagcgtattaaagggatctaaggataaa
aaggtcctacagctgggttttgacagcctatccacctacggcttgttaaaaaactatacc
ttaccagaaatacgagatgccattaatcggttaattgctaccgattatctaatgttaacg
gacagtgaatatccggtagtgaaactggcacctaaaggagtcgccgtattaaaaaatcaa
acaaaagtatggcagaaagtaccgaaacgtacccagaaaataacagcagacaattctctc
tttagtttgctgcgaagcttacgtaaaaccattgctgacagagaacaaataccaccctat
cttgtatttgccgacagcaccttaaaggaaatgagcgaatattgcccaactagctatgat
gctctattgaccataaaaggggtgggagaaagcaaacgaaaacgttatggtgacgagttc
ctcgaagtcttacagcaatatgcattggcaaataatattcaatcctctaacctttctata
gaaagtaaagaagcggctgtaaaagtccaggaaagtcccagccatgttatcagccttgag
ctataccaaaaaggacattctctggaagaaatcagccaaatgcgcaaactaaaatccctt
acgatacaagatcacttggtacgctgctaccaagagggacatcctgtaaactgggatgct
ctgatcccgcctcaatatgaaaagttaattcttagtaaaatagcacaattgggcgcagaa
agattaaaaatcctaaaagacgccttgccagaagaaattgactatgctgccattaaagct
gtactgtgcaaacataataggtaa
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