Polistes fuscatus (common paper wasp): 122514377
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Entry
122514377 CDS
T07683
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pfuc
Polistes fuscatus (common paper wasp)
Pathway
pfuc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfuc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122514377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfuc03019
]
122514377
03041 Spliceosome [BR:
pfuc03041
]
122514377
Messenger RNA biogenesis [BR:
pfuc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122514377
Spliceosome [BR:
pfuc03041
]
Complex B
Other components
Prp19-related factors
122514377
Complex C
122514377
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
ARM_TT21_C
PPR
NRDE-2
Mad3_BUB1_I
DHR-2_Lobe_A
TPR_10
Microp_apicomplexa_6
SNAP
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
122514377
NCBI-ProteinID:
XP_043487107
LinkDB
All DBs
Position
Unknown
AA seq
848 aa
AA seq
DB search
MIERKDNEGNLYSFNDEDLPYEEEILRNPYSVKHWQRYIDHLKNTKSNNLNMVYERALTE
LPGSYKLWYNYLRHRLRQLKKRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCILMTKQ
CYITRTRQVFDRSLRALPITQHHRIWPLYIDFLKKHNVYETSVRVFRRYLKLAPEDTEEY
IEYLISIGRLDEAAIKLAQIVNQDDFVSKHGKSNHQLWNELCNLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLSKCIENETMIATEDGNIELELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRV
KLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVAFGKFYEENNQIADARVIFERATHV
PYTKVDDLASVWCEWAEMEIRHGNSKEALKLMHRATAMPFRKVSYHDENETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEKG
IALFKWPNVYDVWNTYLTKFLKRYGGTKLERTRDLFEQCLEHCPSKYAKALYLLYAKLEE
EHGLARHAMSVYERATSAVLPEERFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDENT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVSSNFWKVWKEFEVQHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNVSGQVSGVQIDSMRALDNKISETAAQAGLKETIKFV
RGITETDGKESSRVNNPDEIDIDMDDDNENEEEEEEEIEEEMSIEKQVIPSQVFGSLKTA
DNDATEDE
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgattgaacgaaaagataatgagggaaatttgtatagttttaatgatgaagatttacct
tatgaagaggaaattttacggaatccttattccgtaaaacattggcaacgttatattgac
catttaaaaaatactaaaagtaataatttaaatatggtttatgaacgtgctttaacagaa
cttcctggaagctacaaattgtggtacaactatcttcgacaccgattaagacaattaaag
aaaagatgtataacagatcccctttacgaagatgtgaataatgcatttgaaagagctttg
gtatttatgcataaaatgccacgtatttggatggattattgtatactaatgacgaaacaa
tgctacatcacacgtactcgtcaagtatttgaccgttctcttagagcacttcctattaca
cagcatcatcgtatttggccgctttacatagactttttgaagaagcataatgtttatgaa
acatctgtcagggtatttagacgatatttgaagttggcaccagaagacactgaagaatat
atagaatatttaatatccattggaagacttgatgaagcggctattaaacttgcgcaaata
gtcaatcaagatgattttgtatcaaaacatggaaaatctaatcatcagttgtggaacgaa
ttgtgtaatttgatatctaaaaatccttctaaaataaaatcacttaatgttgacgctatc
attaggggtggtttaaggagatacacagatcaattaggaccgctttggaactcactggct
gattattatgttcgcagtggtctctttgaaagagcaagagatatttacgaagaagcgata
caaacggtaacgactgtcagagactttacgcaagtttttgatgcatatgctcaatttgaa
gaattaagtctcagtaaatgtatcgaaaatgaaacgatgattgcaaccgaagatggtaat
attgaactagaattgcgtttagcaagatttgaacatctcatggaaaggagattgttatta
ttgaattcagtattattaagacaaaatcctcataatgtacaagagtggcataagagagtt
aaactttacgaaggacaaccgcacgaaataattaatacatacactgaagcagtacaaacc
gtacaaccacaattagcagtcggcaagttacatactttgtgggtcgcatttggcaagttt
tatgaagaaaataatcaaatagcagatgctagagtaatttttgaaagagctactcatgtt
ccttatactaaggtggatgatttagcatcagtgtggtgtgaatgggcagaaatggagatt
agacatggaaattctaaagaggcgttaaagcttatgcatcgtgctaccgccatgccattc
cgtaaagtttcctatcatgatgagaatgaaactgtacaaatgagattgtacaaatcttta
aaagtatggtccatgtatgctgatttagaagaaagttttggtacattcaagacgtgcaag
gctgtatatgataaaataatagatctaaaaatagccacacctcaaattattattaattat
ggtttgttcttagaagaaaataattacttcgaggaagcttttagggcatatgagaaaggg
attgcactctttaaatggcctaacgtatatgacgtatggaatacatatctcactaaattt
ttaaaacgatatggtggaacaaaattggaacgtactcgtgatttgtttgaacagtgttta
gaacactgtcctagtaaatatgctaaagcattatatttattgtatgcaaaattagaagaa
gaacatggtttggccagacatgcaatgtctgtctacgaaagagctactagtgcagtttta
cctgaagaaagatttgaaatgtttaacatatacattaagaaggctgcagatatttacggt
gtgccaaaaactagacaaatatatgaaaaagctattgaagttcttaacgatgaaaatact
agagaaatgtgtttgagatttgctgaaatggaaactaaattaggagaagtagatagagcg
agagctatttatgcacattgcagtcaaatatgcgatcctagggtatcatctaatttctgg
aaagtttggaaggaatttgaagtacaacatggaaatgaagatacaatgcgtgaaatgctt
agaatcaaacgtagtgtacaagccatgtataatactcaagttaatatgatgtctgctcaa
atgttgaacaacgtttccggtcaagtatccggtgtacagatcgatagtatgcgtgcccta
gataacaaaatttctgagacagctgctcaagctggattgaaggaaactattaaatttgta
cgcggtataactgaaactgatggaaaagaatcgtcgcgagtaaataatccggatgaaatt
gatatcgacatggatgatgataatgaaaacgaagaagaagaagaagaagaaattgaagaa
gaaatgtctattgaaaaacaagtcattccatcgcaagtatttggtagcttaaaaacagca
gataacgatgcaactgaagatgaatga
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