Prevotella fusca: ADJ77_01445
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Entry
ADJ77_01445 CDS
T04032
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pfus
Prevotella fusca
Pathway
pfus03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ADJ77_01445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfus03400
]
ADJ77_01445
Enzymes [BR:
pfus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ADJ77_01445
DNA repair and recombination proteins [BR:
pfus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ADJ77_01445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
AAA_22
AAA_16
Cas3-like_C_2
TniB
DUF1366
Motif
Other DBs
NCBI-ProteinID:
AKU69630
UniProt:
A0A0K1NKR6
LinkDB
All DBs
Position
1:358786..362283
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AA seq
1165 aa
AA seq
DB search
MLPQAGAIQQIQEDKSVRTVFLQGLVASAAPMFFASIAERWKSTTVFVLNDNDEAGYFYN
DLKTIAMPSDGEGKVAEVLFFPSSYRRAVKYGQRDAGNEILRTEVLTRLSALASEDDSTY
PLYIVTEPSALSELVVSKKQLDERRLTLTVDQHIDIVEVEKTLRSFGFTETDYVYEPGQF
AVRGSIIDVYSFSNELPFRIDFFGDDIETIRTFEVETQLSDEKLKRIEIVPELTTASEEK
VPFLQFLPDDAVLAFKDFLYVRDAIDNIYQEGFTNQALTEKLEGKTEMEQRELEQAFRKE
GQLVPASRWMNDALDFRRIEFGINHSTSDQAKKKDGARATISFSTSPQPLFHKNFDLLSK
TLRDYLLQGYKLYIFADSEKQTVRLRDIFDSLSDTSVSPESENLSVADMSGEGKDATVGA
LPFIPVNRTLHEGFVDSTLKVCFFTDHQIFDRFHKYNLKSDKARQGKMALTMKELQEMEP
GDFLVHVDFGIGKFAGLVRVPAGDSYQEMIRLVYQHNDIVDVSIHSLYKISKYRRADSGE
PPRLSVLGSGAWDRLKERAKKRIKDIARDLIKLYAKRRREKGFSFSPDSFMQHELEASFL
YEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKTEVAIRAAFKAAVDNKQVAVLVPT
TVLAFQHYQTFKKRLKDMPVRVDYLSRARSTKQTRQVLEDLAAGKINILVGTHKLIGKSV
KWNDLGLLIIDEEQKFGVSTKEKLRQLKTNVDTLTMSATPIPRTLQFSLMGARDMSIMRT
PPPNRYPIQTEIASFSSEVIADAINFEMSRNGQVYFVNDRISNLPEIANLIKKYVPDCRI
AIGHGQMKPEELEEIVMGFMNYDYDVLLSTTIVENGIDISNANTIIINDAHRFGLSDLHQ
MRGRVGRSNKKAFCYLLAPPLAALNPEARRRLEALETFSDLGSGFNLAMQDLDIRGAGNL
LGSEQSGFMEDLGYETYQKILNQAVMELKNDEFQDLYAEEMEEGKQISGDDFIDDCAVES
DLEMYFPDNYVPGSSERMLLYRELDNIEKDEDLDAYRKRLQDRFGPVPRQGEELMQVVAL
RRVGKRLGCEKIILKQGRMQMQFVSNPNSVYYQSEAFDKVLNYIGYHPRRCNLKERNGKR
SMVVSDVATVGEGVMVLRDIEHPRS
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgctgccacaggcaggagcgatacaacagatacaggaagataagtcggtaagaactgtt
ttcctgcaagggctcgtggcatcagctgctccgatgttctttgcatcaatagctgaacga
tggaagtcgacgacagttttcgtgctgaatgataacgatgaggctggttatttctataat
gacctcaagaccatagctatgccatcggatggtgaaggaaaggtggcggaggtgctgttc
ttcccttcttcctatcgtcgtgccgtgaagtatgggcagcgtgatgcgggcaatgaaatc
ctgcgtacagaggttctcacacgcctttctgcacttgcttcggaggatgatagtacatat
ccgctttatatcgtcactgaaccatcagccttgtcagaactcgttgtgtcaaagaagcag
ttggacgagcgtcgtttgacattgacagttgaccagcatattgacattgttgaggtggag
aaaaccttacgttcctttggcttcactgagactgactatgtttatgagccgggtcagttt
gccgtgcgtggtagtattatagatgtgtattccttctcaaatgaacttcctttccgtatt
gacttcttcggtgatgatattgagactatccgtacctttgaagtggaaacgcagctgtct
gatgagaaattgaaacgtattgagattgtgccggagctgactacagcctcagaagagaaa
gtccctttcctgcagttcctgccagatgatgcggtgttggcattcaaggacttcctttat
gttcgtgatgcaattgataatatctatcaggaagggtttactaatcaggcgttgacggag
aaacttgaaggcaagactgagatggagcagcgcgaattagagcaggctttccgtaaggag
ggacagcttgttcctgcctcacggtggatgaacgatgcgcttgacttccgccgtatagag
ttcggcatcaaccattccacctctgatcaggcgaagaagaaggacggtgcacgggctacc
atcagcttcagcacgtcaccgcaaccgctcttccataagaactttgacctgctgtccaag
actcttcgtgactatcttctacaaggttataaactctatatctttgctgatagtgagaaa
cagacggtacgtcttagggatattttcgactcgttgtctgataccagtgtgtcacctgaa
tcagagaatctatccgtagccgatatgtctggagagggtaaggatgcgacagtgggggct
cttcctttcatacctgtaaaccgaacactgcatgaaggcttcgttgacagtacgctgaaa
gtatgtttctttactgatcatcagattttcgaccgtttccataagtacaatctcaagtct
gacaaggctcgtcagggcaagatggcattgacgatgaaagagttgcaagagatggaaccc
ggcgacttccttgtgcatgtagacttcggtattggtaagtttgccggtcttgttcgtgtt
cctgccggcgattcctatcaggagatgatacgtcttgtttatcagcataatgacattgtg
gatgtgtctattcactcactttacaaaatcagtaagtatcgtcgtgctgacagcggcgaa
cctccacgattgtccgttcttggctcgggtgcttgggaccgactgaaagaaagggcgaag
aagcgtatcaaggatattgctcgcgacctcatcaaactctatgctaaacgtcgtcgtgag
aagggtttttccttctctcccgactcttttatgcagcacgaattggaggcttcattcctt
tatgaagacacacccgatcagttgaaggctacacaggaactcaaacaggatatggaaagt
gcacgacctatggaccgtctggtttgtggtgatgtgggctttggtaagacggaagtggct
attcgtgctgctttcaaggctgctgtggataataagcaggtggcagtattggtaccgaca
acggttcttgccttccagcattaccagactttcaagaagcgactgaaagatatgcctgtg
cgtgtagactatctctcacgtgctcgtagtaccaagcagacccgtcaggtgcttgaggat
ctggctgcaggaaagattaatattcttgttggcacgcataagttgataggtaagtcggta
aagtggaacgacctcggactgctcatcattgacgaagaacagaagttcggagtgtctaca
aaggagaaactccgacagctgaaaaccaatgtcgacacgctgacgatgtcggcaactcct
atcccacgtacgcttcagttctcgctgatgggtgcacgtgatatgagtatcatgcgtaca
ccgccacctaatcgttatcctattcagaccgagattgcctctttctcatccgaagtgatt
gcagatgccatcaactttgagatgagccgtaacggacaggtttacttcgtcaatgaccgc
atcagcaatctcccggagatagcaaaccttatcaagaagtacgtgcctgactgccgtatt
gccatcggacacggacagatgaagcctgaggagttggaggaaatcgtgatgggctttatg
aactatgactatgatgtactgctttcaacaacgattgttgagaatggtatcgatatttcc
aatgctaataccatcatcatcaatgatgctcatcgcttcggactctccgacttgcatcag
atgcgtgggcgtgtgggacgttccaacaaaaaagccttctgctatctccttgctccgcct
ttggcagcactgaacccagaggcacgtcgccgtctggaagcattggaaaccttctctgac
cttggaagtggttttaaccttgctatgcaagatcttgatatccggggtgcgggtaacctt
ttagggtctgaacagagcggatttatggaggatttagggtacgaaacctatcagaaaatc
ctcaatcaggcggtgatggagctgaaaaatgatgagttccaagatctttatgcagaggaa
atggaggaaggaaagcagatttcgggcgatgactttattgacgattgtgccgtggagagc
gaccttgaaatgtacttccctgataactatgtgccgggtagttcagagcgaatgttactc
tatcgtgaactggataatatagaaaaggatgaagacctcgatgcctatcgtaagcgtctg
caagaccgtttcggtcctgttccacgtcaaggtgaggagcttatgcaggtcgttgcactt
cgtcgtgtgggcaagcggttgggttgtgagaagattattctcaagcaggggcgtatgcag
atgcagtttgtttctaatcctaatagtgtttactatcagagtgaagcctttgacaaggta
ctcaactacatcggttatcatcctcgccgttgcaatctgaaagagcgcaatggtaagcgt
tcaatggtggtaagcgatgttgcgacggtaggagagggcgtaatggtgctgcgtgacata
gagcatccacggtcataa
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