Pseudomonas fuscovaginae: NLK61_00280
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Entry
NLK61_00280 CDS
T10659
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pfuv Pseudomonas fuscovaginae
Brite
KEGG Orthology (KO) [BR:
pfuv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfuv03016
]
NLK61_00280
Enzymes [BR:
pfuv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NLK61_00280
Transfer RNA biogenesis [BR:
pfuv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NLK61_00280
Prokaryotic type
tRNA splicing ligases
NLK61_00280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UUQ65126
LinkDB
All DBs
Position
complement(55502..56728)
Genome browser
AA seq
408 aa
AA seq
DB search
MQDQTYTLLEVANGKPIKLWTQGVPVEPEARQQLMNTAKMPFIFKHMAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAACTSLTASDLPDNLQGLRSAIERAVPHGRTSPRS
GRDKGAWEDVPSGADLAWSALEPRFKAITDKYPKLKNANHRKHLGTLGSGNHFIEVCLDE
ANRVWFMLHSGSRGVGNAIGNLFIELARADMREHIANLPDRDLAYFEEGSQHFDDYVQAV
AWAQDFARQNRAVMMDAVIAATRQVIRKPFDVALEAVNCHHNYVQKERHFGEEVLVTRKG
AVSAKKGELGIIPGSMGARSFIVRGLGNEQSFCSCSHGAGRVMSRTKARQMFTVDDQIRA
TAHVECRKDEAVIDEIPMAYKDIDQVMHAQRELVEVLHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaccagacttacaccttgctcgaagtcgccaacggcaaaccgatcaaactctgg
acccaaggggttccggtcgagcctgaagctcgccagcaactgatgaatacggcgaagatg
ccgttcatcttcaagcacatggcggtaatgcccgatgtgcatctgggtaaggggtcgacc
atcggtagcgtgatcccgacggtgggcgcgatcattccggcggcggtgggcgtggatatt
ggctgcgggatgattgccgcatgcacctcgctgacggccagcgacctgccggacaacctg
caaggtctgcgcagcgccatcgagcgggccgtgccccatggccgtaccagccctcgcagc
gggcgtgacaaaggcgcctgggaggatgttccgagtggggccgacctggcctggtcggca
ctggagccgcgattcaaggccattaccgacaagtacccgaagctgaagaacgccaaccat
cgcaagcacctgggaaccctggggtcgggtaaccacttcatcgaggtctgcctggatgaa
gcgaaccgcgtctggttcatgctgcacagcggttcgcgtggtgtcggtaacgccatcggc
aacctgttcatcgagctggcccgggccgacatgcgcgaacacatcgccaacctgccggac
cgtgacctggcgtacttcgaagagggtagccagcacttcgacgactatgtgcaagcggta
gcctgggcgcaggacttcgcccggcagaaccgtgcggtaatgatggacgcggtgatcgct
gccacgcgtcaggtgatccgcaaaccgttcgacgtggcgctggaggcggtgaactgccac
cacaactacgtacagaaggagcggcatttcggcgaggaggtgctggtgacccgcaagggc
gcggtctcggcgaagaagggtgagctggggatcattccaggttcgatgggcgccagaagc
ttcatcgttcgtggattgggtaacgagcaatcgttctgctcctgcagccatggcgccggg
cgggtgatgagccggaccaaggccaggcagatgttcaccgtcgatgatcagatccgcgcg
acagcccacgtggagtgccgcaaggacgaggcagtgatcgacgaaattccgatggcctac
aaggacatcgaccaagtgatgcacgcccagcgtgagctggtggaagtgctgcacaccttg
cggcaggtggtgtgtgtgaaggggtag
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