Pseudomonas fuscovaginae: NLK61_04805
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Entry
NLK61_04805 CDS
T10659
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pfuv Pseudomonas fuscovaginae
Pathway
pfuv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfuv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NLK61_04805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfuv03019
]
NLK61_04805
03009 Ribosome biogenesis [BR:
pfuv03009
]
NLK61_04805
Enzymes [BR:
pfuv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NLK61_04805
Messenger RNA biogenesis [BR:
pfuv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NLK61_04805
Ribosome biogenesis [BR:
pfuv03009
]
Prokaryotic type
rRNA helicases
NLK61_04805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
UUQ65973
LinkDB
All DBs
Position
complement(1097990..1099663)
Genome browser
AA seq
557 aa
AA seq
DB search
MTQEIGGFAALELHPSIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLTTVNHLVLDEADEMLKLGFMDDLEVIFKAMPES
RQTVLFSATLPASIRAIAERHLRDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAEATHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALNLAAIEKERPLVPNNMPRGDRPERSGERSERGERERRAPMPLGEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDRLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcatcccagtattgtcgctgca
gtagtcgccaccggctacgaagagccttcggccattcagcagcagtcgatcccgatcatc
cttgccggtcacgacatgattggtcaggcacaaaccggtaccggtaaaacggccgcgttc
gccctgcctatcctgcaccgcatcgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaacccgtgagttggcgctacaagttgcaaccgctttcgaaacctacgccaagcag
atgccgggcgtgacggtcgtggctgtctacggcggcgcgccgatgggcccacaattgaaa
gcaatccgaaatggcgcacagatcgttgtcgccaccccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagtcctgacgaccgtgaaccacctggttctcgacgaagcggacgaa
atgctcaagctcggcttcatggatgacctggaagtcatcttcaaggccatgccggaaagc
cgccagaccgtactgttctcggcgaccctgccagcttcgatccgtgcgatcgccgaacgc
catctgcgcgatccgaagcacgttaagatccagagcaagacccagaccgtcaccgcgatc
gagcaggctcacctgctggttcacgccgaccagaagacctcggccgtgctgagcctgctg
gaagtcgaggacttcgacgcgctgatcatgttcgtacgtaccaagcaggccaccctggac
ctggccagcgcgcttgaagccaagggctacaaggctgcagccctgaacggtgacatcgcc
cagaaccagcgtgagcgcgtgatcgactcgctcaaggatggtcgcctggacatcgtggtt
gctaccgacgtggcagcccgtggcctggacgttccgcgtatcacccacgtgttcaacgtc
gacatgccgtacgatcccgagtcctatgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgtgcgctgctgctggtgacgccgcgtgagcgtcgtatgctgcaggtgatc
gagcgtgtgaccggtcagaaggtggctgaagtgcgtctgccggatgcccaggccgttctc
gatgcgcgcatcaagaaactgaccaacagcctgtcgccactggtggctgacgccgaagcg
actcacggtgatctgctcgatcgcctgaccgccgatatcggttgcagcccgcgtgctctg
gccgctgcgctgctgcgcaaggctaccaatggtcaggcgctgaacctggcggcgatcgag
aaagagcgtccgttggtgccgaacaacatgccgcgtggcgatcgtccggagcgttccggt
gagcgttccgagcggggtgagcgtgagcgtcgtgcaccaatgccactgggcgaaggccgt
gcccgttgccgtaccgcgctgggcgcgcgtgacggtatcgcggcaaagaacctgctgggc
gccatcctcaacgaaggtggtctggcacgtgaagccatcggtcgcatccaggtgcgtgac
agcttcagcctggtggaactgccggaagacggtctggatcgcttgctgaccaagctgaaa
gacacccgcgttgccggcaagcagctcaagctgcgtcgctaccgcgaagattga
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