Pseudomonas fuscovaginae: NLK61_15640
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Entry
NLK61_15640 CDS
T10659
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfuv Pseudomonas fuscovaginae
Pathway
pfuv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfuv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NLK61_15640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfuv03019
]
NLK61_15640
Enzymes [BR:
pfuv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NLK61_15640
Messenger RNA biogenesis [BR:
pfuv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NLK61_15640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UUQ62734
LinkDB
All DBs
Position
complement(3466338..3468203)
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AA seq
621 aa
AA seq
DB search
MSFASLGLSEALVGAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL
AHLITTGAWEQVLVFTRTKHGANRLAEYLDKHGLSAAAIHGNKSQNARTKALADFKAGEI
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTRQKIADGDLVGFDASAVEAEKPEVRERPEGRNPRNARAPRGESDKGGGSGRK
DKGKDKGGKEKEKSASSGRGERPAREQKPRDPQPRQVPRPAPDRDPEEFLDDDVDNFGNR
VDYVPPAAPKNQGRGRRPGTAAQGAPRSSGGGAAQGRQNSQRSNNGTGASTGSGAGAGTP
KRNGRNGARDGQPRRDDSRSRRPARDEQSTRQEPAVKSPRENQPKIMHKEPKIDRSLTPE
QLDQLPNRPRGEKPALLTRNR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttggtcggcgccatcgaggctgccggc
tacaccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggccgcgac
ctgatggtcgccgcacagacaggtactggtaaaaccggcggcttcgccctcccgattctg
gagcggttgttccccaatggtcacccggacaaatcccagcgccacggcccgcgccaacct
cgcgtgctggtcctgaccccaacccgcgaactcgccgcccaggtccatgaaagcttcaag
ctctatgcccgcgacctgaagttcgtcagcgcctgcatcttcggcggtgtcggcatgaac
ccgcaggtacaggccatggcccgtggcgtcgacgtgctcgtcgcctgcccgggccgtctg
ctggacctggccggacaaggcagcgtcgacctgtcccacgtggaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggcttcgtccatgacgtgaagaaggttctcgcacga
ctgccagccaaacggcagaacctgctgttctcggcaaccttctccaaggacatcaccgac
ctcgccggcaagttgctgcacaacccggaacgcatcgaagtgacgccgccgaacaccacg
gtcgagcgcatcgagcaacgcgtgttccgcctggccgccagtcacaaacgggcattgctg
gcccacctgatcaccacaggcgcctgggaacaggtgctggtgttcacccgtaccaagcac
ggcgccaaccgtctggccgagtacctggacaagcatggcctgagcgctgcggcgattcac
ggtaacaagagccagaacgcccgcaccaaggccctggccgacttcaaggctggcgaaata
cgcatcctggtcgccaccgatatcgcggcacgtggcctggatatcgaccagttgccacac
gtggtcaacttcgagctgccgaacgtcgatgaagactacgtccaccgtatcggtcgtacc
ggccgcgccgggcgctcgggcgaggcgatttccctggttgccccggacgaagagaagctg
ctcaaaagcatcgaacgcatgacccggcagaagatcgccgatggcgacctggtgggcttt
gacgccagtgccgtggaagccgaaaaaccggaagtgcgcgagcgtccggaaggccgcaat
ccgcgcaatgcccgcgcccctcggggtgagtcggacaagggcggcggcagtggtcgcaag
gacaagggtaaggacaagggcggtaaggaaaaggaaaaatcggcgagcagcggtcgtggc
gaacgtccggcccgcgagcagaaaccacgtgacccacaaccacgccaagtgccacgcccg
gccccggaccgtgatccggaagagttcctggatgatgatgtggacaacttcggcaatcgc
gtcgactacgtgccaccagcagcgccgaagaaccagggccgtggtcgccgtccaggcacc
gccgcccagggtgccccacgtagcagcggcggtggtgcggcccaaggtcgccagaatagc
cagcgcagcaataatggcacgggcgccagcactgggtccggagcaggcgctggcacgcca
aaacgcaatggccgcaacggcgcgcgcgacggccagccacgccgcgatgattcgcgcagc
cgccgtccggcacgggacgagcaatcgacccgtcaggaaccggccgtgaaaagcccgcgt
gaaaaccagccgaagatcatgcacaaggagccgaagatcgatcgctccctgacgcctgag
caactggatcagttgccgaaccgcccgcgtggcgaaaaaccggcgttgctgacccgcaat
cgctga
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