Pseudomonas fuscovaginae: NLK61_16395
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Entry
NLK61_16395 CDS
T10659
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pfuv Pseudomonas fuscovaginae
Pathway
pfuv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pfuv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NLK61_16395 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfuv03021
]
NLK61_16395 (rpoD)
Transcription machinery [BR:
pfuv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NLK61_16395 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
UUQ62876
LinkDB
All DBs
Position
complement(3637422..3639269)
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AA seq
615 aa
AA seq
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MSGKAQQQSRLKELISRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDYILDEYNRVTSEGGRLSDVLSGYIDPDDGIALPAAE
VPPPVDAKTGKENATDDEDEESDSDDEEEVESGPDPIVAAQRFGAVADQLEIARKALKKH
GRGNKATIAELLLLAELFMPIKLVPKQFEVLVERVRSALERLRQQERAIMQLCVRDARMP
RADFLRQFPGNEIDESWTDALAKGKSKYAEAIGRLQPDIIRCQQKLTALEAETGLTIAEI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVE
SLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPTRSEHLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgcctcaaagagttgatcagccgtggtcgtgag
cagggttacctgacttacgcggaggtcaacgaccacctgccggaggatatttcagatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gctccggatgcggatgcccttttgttggccgaagccgataccgacgaagccgctgccgaa
gaagcagcggcggcgctcgcggctgtggaaaccgacatcggtcgcactaccgacccggtg
cgcatgtatatgcgcgaaatgggcacggtagagctgctcacacgtgaaggcgaaattgaa
atcgccaagcgtatcgaagagggcatccgtgaagtgatgggcgcaatcgcgcacttccct
ggcacggttgactacatcctcgacgaatacaatcgcgtcaccagcgaaggtggccgtctg
tccgacgttctcagcggttacatcgatccggacgacggcatcgcgctgcctgccgccgaa
gtaccgccaccggtcgatgccaagaccggcaaggaaaacgccaccgatgacgaggacgaa
gagtccgacagcgacgacgaggaagaggtcgaaagcggcccggaccctatcgttgccgca
cagcgtttcggtgccgtcgccgatcagctggaaatcgctcgcaaggcgctgaaaaagcac
ggtcgcggcaacaaggcgaccatcgccgagctgctgctcctggccgagctgttcatgccg
atcaagctggttcccaagcagttcgaagtcctggtcgagcgtgttcgcagtgctctggag
cgtctgcgtcagcaagaacgcgccatcatgcaactgtgcgtgcgtgatgcccgcatgccg
cgtgccgatttcctgcgccagttcccaggcaacgaaatcgacgaaagctggaccgacgcc
ctggccaaaggcaagagcaaatacgccgaagccatcggccgcctgcagccggacatcatc
cgttgccagcagaagctgaccgcactcgaggccgaaaccggcctgacgattgccgagatc
aaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaagag
atggttgaagccaacctgcgtctggtgatctccatcgccaagaagtacaccaaccgtggc
ctgcaattcctcgacctgatccaggaaggcaacatcggtctgatgaaagcggtggacaag
ttcgaataccgtcgcggctacaagttctcgacctatgccacctggtggatccgtcaggcg
atcactcgctcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatcgag
accatcaacaagctcaaccgcatttcccggcagatgctgcaggaaatgggtcgtgaaccg
acgccggaagagctgggcgaacgcatggaaatgcctgaggacaagatccgcaaggtattg
aagatcgccaaagagccgatctccatggaaacgccgatcggtgatgacgaagactctcat
ctgggtgatttcatcgaagactcgaccatgcagtcgccgatcgatgtcgccaccgtagag
agcctcaaggaagctacccgcgaagtgctgtccggcctcactgcccgtgaagccaaggta
ctgcggatgcgtttcggtatcgacatgaataccgaccacaccctcgaagaagtcggcaaa
cagttcgacgtgacccgcgagcggattcgtcagatcgaagccaaggcgttgcgcaagctg
cgtcacccgacgcgaagcgagcatctgcgctccttcctcgacgagtga
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