Pseudomonas fuscovaginae: NLK61_16725
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Entry
NLK61_16725 CDS
T10659
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pfuv Pseudomonas fuscovaginae
Pathway
pfuv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfuv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NLK61_16725 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfuv03021
]
NLK61_16725 (rpoC)
03400 DNA repair and recombination proteins [BR:
pfuv03400
]
NLK61_16725 (rpoC)
Enzymes [BR:
pfuv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NLK61_16725 (rpoC)
Transcription machinery [BR:
pfuv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NLK61_16725 (rpoC)
DNA repair and recombination proteins [BR:
pfuv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NLK61_16725 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF3150
Motif
Other DBs
NCBI-ProteinID:
UUQ62930
LinkDB
All DBs
Position
3703292..3707491
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVNDRDGNSVKNTRIVDTTVGRALLFQVVPAGLSFDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLSAEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagtttgacgccatc
cgtatcggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atctttggcccggtcaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcat
cgtggtgtgatctgtgagaagtgcggcgttgaagtcgctctggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcttcgccggttgcccacatctggttcctgaagtccctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgtcgttatcgacccgggcatgaccaccctggaaaaaggccaactgctg
aacgacgagcagtacttcgaagccctcgaagagttcggtgacgacttcgacgcccgtatg
ggtgccgaggctgtccgcgagctgctgcacgcgatcgacctggagcacgagattggccgt
ctgcgcgaagagattccgcaaaccaactcggaaaccaagatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacctgccagagtggatggtgttgacc
gttctgccggttctgccgccagatctgcgtccactggtcccgctggatggcggtcgcttt
gcgacttccgacctcaacgatctgtatcgtcgggtgatcaaccgtaacaaccgtctcaag
cgtctgctggatctgtccgcgcctgacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagctgtggacgccctgctggacaacggtcgtcgcggtcgcgccattaccggttcgaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacctgctcggtaagcgcgttgactactccggtcgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaaaatggctctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgccagaggtgtgggacgttctcgccgaagtgattcgcgaacacccc
gtactgctcaaccgtgcaccgacccttcaccgtctgggtatccaggcttttgaaccggta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggtgaccaaatggccgtgcacgtgccgctgacactggaagcccagctggaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccgatcatc
gttccttcgcaggacgtggtactgggtctgtactacatgacccgcgaagcgatcaacgcc
aagggcgaaggtcgtgtgtttgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagctgcgctgcacgccaagatcaaggttcgtatcaacgaaaccgtgaacgaccgtgac
ggcaacagcgtcaagaacacccgtatcgtcgacaccactgtcggccgtgcgctgttgttc
caagtggttccggcgggcctgtcgttcgacgtcgtcaacctgccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggtgggtctgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggttttgcctactcgactatctccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcggtgctgccaccgacgaa
gtgaaagagatcgagagccagtacgcctccggcctggttacccagggcgagaagtacaac
aaggttatcgacttgtggtccaaggcgaacgacgaagtctccaaggcgatgatggccaac
ctctcgaaagagaaagtcatcgaccgtcatggtgtcgaagtcgaccaggagtccttcaac
tctatgtacatgatggccgactcgggtgcacggggttctgctgcgcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggttccatcattgagacgccgatcacc
gcgaacttccgtgaaggtttgagcgtactccagtacttcatctcgactcacggtgctcgt
aagggtcttgcggataccgcgttgaaaaccgccaactccggttacctgactcgtcgtctg
gtagacgtggcgcaagacctggtcgtgaccgagatcgattgcggtaccgagcatggcctg
ctgatgactccgcacattgaaggcggtgacgtcgtagagccgctgggtgagcgcgtgttg
ggtcgtgtgatcgcccgtgacgtgttcaagccgggtaccgaggacgtcatcgttcctgcc
ggcaccctggttgacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcagctgtgaaacccgctacggcatctgcgccaagtgctacggt
cgtgacctggctcgtggtcaccaggtgaacatcggtgaagcggtcggcgtaatcgctgcc
cagtccatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcaagccggacctccgcagctgacagcgttcaggtgaagaatggcggtaccgtccgtctg
cataacctgaagcacgttgagcgcgtggatggtcacctggttgctgtgtcccgttccggt
gagctggccattgctgatgacttcggtcgtgagcgtgagcgttacaagctgccgtacggt
gctgtgatttcggttaaagagggtgacaaggtcgacgctggcgcaatcgtggccaagtgg
gatccgcacactcacccaattgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtccttgacgccaaggatcgtccagctgctggtaaggacatccgtcctgccgtgaagatg
gtcgacgacaatggcaaggatctgttgctgccaggcactgacgttatcgctcagtacttc
ctgccagctaacgccctggtcggtgtagcggacggtgcgaagattgcgatcggtgatgtt
atcgctcgtatcccgcaagaaacctcgaagacccgtgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagctcgtcgtccgaaagaagcgtcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaggagaccaagggcaagcgccgtctggttatcactccgaac
gacggtagcgatccgtatgaagagctgattccgaagtggcgtcacctgaacgtgttcgaa
ggcgaacaggtcaaccgcggcgaagttatctccgacggcccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagcgcgctggccaagtacatcgttaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgaaatcgctgaatccggcgattccagtttcatcaagggcgaccagatg
gaattgactcacgttctggtagagaacgagcgtttgagtgccgaagacaagtttgtctcc
aagttcactcgcgttctgctgggtatcaccaaggcgtcgttgtccaccgaatcgttcatc
tcggcggcttccttccaggaaaccacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgactacctgcgcggcctgaaagaaaacgtggtcgtgggtcgtttgatcccggccggt
accggcctggcctaccacagcgagcgtaagcgtcgccgtgatgcagacaagccgttgcgc
gtgagcgccagtgaagtggaagctgcactgaccgaagcgctgaactcgagcggtaactga
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integrated database retrieval system
