Pseudomonas furukawaii: KF707C_18900
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Entry
KF707C_18900 CDS
T07047
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pfuw
Pseudomonas furukawaii
Pathway
pfuw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfuw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KF707C_18900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfuw03019
]
KF707C_18900
03009 Ribosome biogenesis [BR:
pfuw03009
]
KF707C_18900
Enzymes [BR:
pfuw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KF707C_18900
Messenger RNA biogenesis [BR:
pfuw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KF707C_18900
Ribosome biogenesis [BR:
pfuw03009
]
Prokaryotic type
rRNA processing factors
KF707C_18900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAU73578
LinkDB
All DBs
Position
complement(2058910..2062080)
Genome browser
AA seq
1056 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGAE
RHGFLPLKEISREYFKKNPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSSEELQWDLD
YLLQLWSAIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAHEEALSFIR
QVMPQYQSKIKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINS
ARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREA
LEADRARVQIGRISRFGLLEMSRQRLRPSLGETSGIVCPRCDGQGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRSRIVILPNDHLETPHFEVQ
RLRDDSPEVQNSQSSYEMTPAEVEEHQPVASTRTLVRQEAAVKTVSPERPAPAPTPVAPP
PAPAAPAPEPSLFKGLVKSLVGLFAGKEEPKVEAEKPVAERQPRGEERRNGRQQNRRRDG
REGRESRRDDDRKPREERQPREAREGQENRRERGERPAREERQPREERQPREERQPRDER
QPREERQPREERQPREERQPREERQPREERQPREERQPREAREGQENRRERGERPAREER
QPREERQQRTEQATQAQAEATDEELLSNEELLQDDDQEGADGERPRRRSRGQRRRSNRRE
RQREANGDEVTEDQDGEAVPAEAAQAAAVAAVAVAASEVVAEATTREEPVQVEGFAEAEA
ASAEAVVETVMVAQAEEAVPAAQEAPTVIEAPASESSAVESPTVETPAAEAAPVEQEVVA
ETSAPAQEEIAAETSVEVKAASVEDATQGRTATGRAPNDPREVRRRQLEAKRLAKEAEEA
AAKAVDAVAAAEPVSVAAHALAGVEEEAVATEPKAEDAVEQSVEAPAELVAEPAREEAPA
EQATPEETTSATETPADTEAEEAEKDEAKDATKPVV
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcagcccgaagagttgcgtgttgccctggtggacggccaacgc
ctgtacgacctggacatcgaatcgggtgcccgcgagcagaagaaggccaacatctacaaa
ggccgcattacccgcatcgagcccagcctcgaagccgccttcgtagatttcggcgcagag
cgccatggtttcctccccctcaaggaaatctcccgcgagtacttcaagaagaacccggaa
ggccgggtcaacatcaaggaagtgctcagcgaaggccaggaagtcatcgtccaggtcgag
aaagaagaacgtggcaacaagggcgcagccctgaccactttcatcagcctcgccggccgc
tacctggtgctgatgcccaacaaccctcgcgccggtggcatctcccgccgcatcgaaggt
gaagagcgcaacgagctccgcgaagcgctgaacggcctgaacgcgccggccgacatgggc
ctgatcgtgcgcaccgccggccttggccgctccagcgaagagctgcagtgggacctggat
tacctgctgcaactctggagcgccatcaaggaagcctccggcgagcgcggtgcccccttc
ctgatctatcaggaaagcaacgtcatcatccgcgccatccgcgactacctgcgccaggac
atcggcgaagtactggtggacagcgtcgaggcccacgaagaggccctgagcttcattcgc
caggtgatgccgcagtaccagagcaagatcaagctctatcaggacagcgttccgctgttc
aaccgcttccagatcgagagccagatcgaaaccgccttccagcgcgaagtgaagctgcct
tccggcggttccatcgtcatcgacccgaccgaagcgctggtgtccatcgacatcaactcg
gcccgtgcgaccaaaggcggcgacatcgaggaaaccgccctgcagaccaacctggaagcg
gccgaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatcgtcatcgac
ttcatcgacatgacgccggccaagaaccagcgcgccgtggaggagaaggtccgcgaggcc
ctggaagccgaccgcgcccgtgtacagatcggccgcatctcccgcttcggcctgctggaa
atgtcgcgccagcgcctgcgcccatccctgggcgagaccagcggcatcgtctgcccccgt
tgcgacggccagggcatcatccgtgacgtggaatccctctcgctggccatcctgcgcctg
atcgaggaagaagccctgaaggaccgcaccgccgaggttcgtgcccaggtgccgatcccc
gttgccgcgttcctgctcaacgagaagcgcaacagcatcaccaagatcgagctgcgcacc
cgcagccgtatcgtcatcctgccgaacgaccatctggaaaccccgcacttcgaagtccag
cgcctgcgcgacgacagcccggaagtgcagaacagccagtccagctacgagatgacgccg
gcggaagtcgaggagcatcagcctgtcgcctccacccgcaccctggttcgccaggaagcg
gcggtgaagaccgtctcgcccgagcgccccgcgccggcgccgaccccggttgcgccgccg
cccgcccccgccgccccggctccggaacccagcctgttcaagggcctggtgaagtcgctg
gtaggcctgttcgccggcaaggaagaacccaaggtcgaagccgagaagccggtcgctgaa
cgccagccgcgaggcgaagagcgtcgcaatggccgccagcagaaccgtcgccgtgatggc
cgtgaaggtcgtgaaagccgccgtgatgacgatcgcaagccgcgtgaagagcgccaaccc
cgcgaagctcgcgaaggccaggaaaaccgtcgcgagcgtggcgagcgtccggctcgcgaa
gagcgtcagccgcgcgaggaacgtcagccccgtgaggagcgccaaccgcgcgatgaacgt
cagccccgcgaagagcgtcaaccgcgcgaggaacgtcagccccgcgaagagcgccagccc
cgtgaggagcgtcagccccgcgaagagcgccaaccccgtgaggagcgtcagccccgcgaa
gcgcgcgaaggccaggaaaaccgccgtgagcgtggtgaacgccccgcccgcgaagagcgc
cagccgcgagaagagcgtcaacagcgcaccgagcaggccacccaggcgcaggccgaggcc
actgatgaagaactgctgagcaacgaagaactgctgcaggacgacgaccaggagggcgcc
gacggcgaacgcccccgccgtcgttcccgtggccagcgtcgccgcagtaaccgtcgcgag
cgccagcgtgaagccaacggcgacgaagtgaccgaagaccaggacggcgaagccgtaccg
gccgaggctgcccaggccgctgccgtggccgccgtagcggttgccgccagcgaagtggtc
gccgaagccacgacccgcgaggagcccgtccaggtcgaaggcttcgccgaagcggaggca
gcctctgcggaagcggtcgttgaaaccgtcatggtcgcccaggcggaagaggccgttccg
gccgcccaggaagcaccgaccgtcatcgaggccccggccagcgaaagttcggccgttgag
tcgccgactgtcgagactccggcagccgaggctgctccggtggagcaggaagtcgttgcc
gaaaccagtgccccggcacaggaggagatcgctgcagagacttccgtggaagtgaaagcc
gcctccgtcgaggacgcaactcaaggtcgtaccgcgaccggccgtgcccctaacgacccc
cgcgaagtgcgtcgccgtcagctcgaagccaagcgactggccaaggaagccgaggaagcc
gccgccaaggccgttgacgccgtagccgccgccgagcctgtctccgttgccgcccatgcc
ctcgccggcgtggaagaggaagcggttgccaccgagccgaaggcggaagacgccgtcgag
cagagcgtggaagccccggccgaactcgtagcggaacccgcccgcgaggaagccccggct
gagcaggcgaccccggaagagaccaccagcgcaaccgaaaccccggcggataccgaggcc
gaggaagcggaaaaggacgaagccaaggacgcgaccaagccggtcgtctga
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