Metapseudomonas furukawaii: KF707C_34380
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Entry
KF707C_34380 CDS
T07047
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pfuw
Metapseudomonas furukawaii
Pathway
pfuw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfuw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KF707C_34380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfuw03400
]
KF707C_34380
Enzymes [BR:
pfuw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KF707C_34380
DNA repair and recombination proteins [BR:
pfuw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KF707C_34380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AroM
ERCC3_RAD25_C
Zeta_toxin
DUF5324
Motif
Other DBs
NCBI-ProteinID:
BAU75126
UniProt:
A0AAD1C207
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All DBs
Position
3724669..3728115
Genome browser
AA seq
1148 aa
AA seq
DB search
MPLSVLRLPPLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQEL
GFFAPDLDVLHFPDWETLPYDLFSPHQDIISQRVDTLYRLPGVKHGVLVVPITTALHRLA
PTRFLLGSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSDL
PYRIDLFDDEIETLRTFDPETQRSIEKVESIRLLPAREFPLDKKAVTDFRGRFRERFDVD
FRRCPIYQDLASGITPSGIEYYLPLFFEESATLFDYLPTDTQVFSLPGIEQAAEQFWGDV
RNRYEERRVDPERPLVPPAELFLPVEDCFARLKGSPRLVLSQEDVEPGIGRERFSARALP
DLAIQAKASEPLAALRRFLDEFPGRVLFSAESAGRREVLLEMLARLKLRPLEVDGWSAFI
ASDQRMAITIAPLDEGLLLDDPGLALIAESPLFGQRVMQRRRRERRGDANDNVIKNLAEL
REGAPVVHIDHGVGRYLGLITLEIDGQAAEFLALQYAEEAKLYVPVASLHLIARYTGSDD
ALAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFLDPKVDYATFAAGF
PFEETPDQQAAIEAVLADMLAPKPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVLVP
TTLLAQQHYNSFRDRFADWPVKVEVMSRFKSAKEVEGAVQQLAEGKIDIIIGTHKLLQDD
VRFKNLGLAIIDEEHRFGVRQKEQLKSLRSEVDILTLTATPIPRTLNMAVAGMRDLSIIA
TPPARRLSVRTFVMERQNTAIKEALLRELLRGGQVYYLHNEVATIEKCAAELAELVPEAR
IAVGHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPPRKQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGE
LLGEGQSGQIQAVGFTLYMEMLERAVKAIQKGEQPNLEQPLGGGPEINLRVPALIPEDYL
PDVHARLILYKRIASAADEDGLKELQVEMIDRFGLLPEPTKHLVRLTLLKLQAEKLGIRK
VDAGPQGGRIEFAQDTCVDPLVLIKLIQGQPKRYKFEGATLFKFQVPMERPEERFNTLEA
LFERLAPQ
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
ttgcccctgtccgtactgcgtctcccgcccctgcccgccgctgccggcaaacagcattgg
ggcaacctgcccggtgccgccctcagcctggcgatcgccgaagccgccagcgccgccaag
cgcttcaccctgctactgaccgccgacagccagagcgccgagcgcctggagcaggaactc
ggcttcttcgcacccgacctggacgtgctgcattttcccgattgggaaaccctgccctac
gacctgttctcgccccaccaggacatcatttcccagcgggtcgacaccctgtaccggttg
cccggggtcaagcacggcgtactggtggtgcccatcaccaccgcgttgcaccgcctggcg
ccgacccgcttcctgctgggctcgagcctggtgctggacgtgggccagaaactggatgtg
gagcagatgcgcctgcgcctggaggctgccggctaccgctgcgtggacacggtgtacgag
catggcgagttcgccgtgcgtggcgccctgatcgacctcttccccatgggcagcgacctg
ccctaccgcatcgacctgttcgacgacgagatcgagaccctgcggaccttcgacccggag
acccagcgttccatcgagaaggtggagtcgatccgcctgctgccggcccgggagttccca
ctggacaagaaggccgtcaccgatttccgcggacgtttccgcgagcgtttcgacgtggac
ttccgccgctgccccatctatcaggacctggccagcggcatcacgccttcggggatcgag
tactacctgccgctgttcttcgaagagtccgccaccctcttcgactacctgccgacggac
acccaggtgttctccctgccggggatcgagcaggccgccgagcagttctggggcgacgtg
cgcaaccgctacgaagaacgccgcgtcgatccggaacggccgctggtgccgcccgccgaa
ctcttcctgccggtggaggattgctttgcccgcctgaaagggtccccgcgcctggtcctg
agccaggaggatgtcgagcccggcatcggccgtgagcgtttttccgcccgggccctgccc
gacctggcgatccaggccaaggccagcgagcccctggccgccctgcgccggttcctcgac
gagttccccggccgcgtgctgttcagcgccgagtccgccggccgccgcgaagtgctgctg
gaaatgctcgcacgtctcaagctgcgtccccttgaagtggatggatggtcagccttcatc
gccagcgaccagcgcatggccatcaccatcgcgccgctggacgaaggcctgctgctggat
gatccgggccttgccctgatcgccgagagcccgctgttcggccagcgggtgatgcagcgc
cgccgccgcgagcgccggggcgacgccaacgacaacgtcatcaagaacctggccgaactg
cgcgagggcgcaccggtggtccatatcgaccacggggtcggccgctacctgggcctgatc
accctggagatcgacggccaggccgcggaattcctcgccctgcagtacgccgaggaggcc
aagctctacgtgccggtagccagcctgcacctgatcgcccgctacaccggcagcgacgac
gccctcgccccgcttcaccgactgggttccgaggcctggcagaaggccaagcgcaaggcc
gccgagcaggtccgcgacgtggccgccgaattgctggacatctacgcacgccgcgccgct
cgcaagggctatgccttcctcgaccccaaggtcgactacgccaccttcgccgccggcttc
cccttcgaggagacgccggaccagcaggccgccatcgaagcggtactggcggacatgctc
gcccccaagcccatggaccgcctggtctgcggcgacgtgggcttcggcaagaccgaagtg
gccatgcgcgccgccttcgtcgccgtccacagcggcaagcaggtggcggtgctggtgccc
accaccctgctggcccagcagcactacaacagcttccgcgaccgcttcgccgactggccg
gtgaaagtggaggtcatgagccgcttcaagtccgccaaggaggtggaaggcgcggtgcag
caactggccgagggcaagatcgacatcatcatcggcacccacaagctgctgcaggatgat
gtccgcttcaagaacctgggcctggccatcatcgacgaggagcatcgcttcggcgttcgc
cagaaggagcaactgaagtccctgcgcagcgaggtggacatcctcaccctgaccgccacg
ccgatcccgcgcactctgaacatggccgtggccggcatgcgcgacctctccatcatcgcc
acgccgccggcgcgccgcctgtcggtgcgcaccttcgtcatggaacggcagaacaccgcg
atcaaggaggcgctgctccgcgagctgctgcggggcggccaggtctactacctgcacaac
gaggtggccaccatcgagaagtgtgccgccgagctggccgaactggtgccggaggcccgc
atcgccgttggccacggacagatgcgcgaacgcgacctggaacaggtgatgagcgacttc
taccacaagcgcttcaacgtgctggtggcctcgaccatcatcgagaccggcatcgacgtg
ccgagcgccaataccatcgtcatcgagcgtgccgacaagttcggcctggcccagctgcac
cagttgcgcggccgcgtcggacgcagccaccaccaggcctatgcctacctgctgacgcca
ccccgcaagcagatgacgccggacgccgagaagcgcctggaagccatcgccaacgcccag
gacctgggcgccggcttcgtgctggccacccacgacctggaaatccgcggcgccggcgaa
ctcctgggcgagggacagagcggccagatccaggcggtgggcttcaccctctacatggaa
atgctggagcgcgcggtcaaggccatccagaagggcgaacagcccaatctggagcagccc
ctgggcggcgggccggagatcaacctgcgggtcccggcgctgattcccgaggactacctg
cccgacgtccatgcacgcctgatcctgtacaagcgcatcgcctcagccgccgacgaggac
ggcctgaaggaactccaggtggagatgatcgaccgcttcggcctgctgcccgagcccacc
aagcacctggttcgcctgaccctgctgaagctgcaggcggagaagctcggcatccgcaag
gtggacgccggcccccagggcgggcgcatcgagttcgcccaggacacctgtgtcgacccc
ctggtcctgatcaagctgatccagggccagcccaagcgctacaagttcgaaggcgccaca
ctgttcaagttccaggtgcccatggagcgcccggaagaacgcttcaacaccctcgaggcg
ctgttcgagcgcctggctccgcagtag
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integrated database retrieval system
