Pseudomonas fulva: Psefu_0166
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Entry
Psefu_0166 CDS
T01501
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pfv
Pseudomonas fulva
Pathway
pfv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Psefu_0166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfv03400
]
Psefu_0166
Enzymes [BR:
pfv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Psefu_0166
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Psefu_0166
DNA repair and recombination proteins [BR:
pfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Psefu_0166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DZR
Motif
Other DBs
NCBI-ProteinID:
AEF20152
UniProt:
F6AE77
LinkDB
All DBs
Position
188095..188907
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLIGQRVSRVIVRERRLRWPIPEDLDVRLSGQRIEAVERRAKYL
LIKAEVGTLISHLGMSGNLRLVEAGLPAAKHEHVDIELESGLALRYTDPRRFGALLWSEL
PLEHELLVRLGPEPLTELFDGERLFQLSRGKAVAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRRAAGTVSRARYVRLAQEIKRVLAHAIERGGTTLRDFIGGDGQPGYFQQELFAYGR
GGEFCKVCGSTLREVKLGQRASVYCPKCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattgccagaagtcgaaaccacgcgccgtggtatcgccccccacctcattggt
cagcgcgtcagtcgggtcatcgtgcgtgaacggcgcctgcgctggccgatccccgaagac
ctcgatgtgcgcctgtccggccagcgtatcgaagccgtggagcggcgcgccaagtacctg
ctgatcaaggccgaagtcggcacgctgatcagccacctgggcatgtccggcaacctgcgt
ctggtcgaggcggggctgccggcagccaagcacgagcatgtggatatcgagctggagtcc
ggcctggcgctacgttacaccgacccgcggcgcttcggcgcgctgttgtggagcgaactg
ccgctggagcatgagctgctggtgcgcctcggcccggagccgctgaccgagctgttcgat
ggcgagcgcctgtttcagctgtcgcgcggcaaggcggtggcggtcaaaccgttcatcatg
gacaacgcggtggtggtgggcgtcggcaacatctacgccaccgaggcgctgttcgccgcc
ggcatcgatccgcgccgcgccgccggcacggtgtcgcgggcgcgctacgtgcgcctggct
caggagatcaagcgggtgctggcccacgccatcgagcgcggtggcactaccctgcgcgac
ttcatcggcggcgacggccagcccggttacttccagcaggagttgttcgcctatggccgc
ggcggcgagttctgcaaggtgtgcggcagtaccctgcgcgaggtgaagctgggccagcgg
gccagcgtttattgcccgaaatgccagcgctga
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