Pseudomonas fulva: Psefu_0485
Help
Entry
Psefu_0485 CDS
T01501
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pfv
Pseudomonas fulva
Pathway
pfv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psefu_0485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfv03021
]
Psefu_0485
03019 Messenger RNA biogenesis [BR:
pfv03019
]
Psefu_0485
Transcription machinery [BR:
pfv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Psefu_0485
Messenger RNA biogenesis [BR:
pfv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Psefu_0485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
NACHT
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AEF20467
UniProt:
F6AHK1
LinkDB
All DBs
Position
537297..538556
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLEMAEQMGIENMARSRKQDVIFSLLKKHAKGGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSIN
FDRPENAKNKILFENLTPLFPNQRLTMEAGNGSTEDITGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRAGTRREELLTAEDELQRMWILRKLLHPMDEIAAIEFLIDKLKATKTNDEFFMSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgaactgctggaaatggccgagcag
atgggcatcgagaacatggcccgttcgcgcaagcaggacgtcatcttctcgctgttgaaa
aagcacgccaaaggcggtgaagaaatttccggtgatggcgtgctggagatcctccaggac
ggcttcggcttcttgcgcagcgcagacgcctcctatctcgccggccccgatgacatctat
gtctcgccgagccagatccgccgcttcaacctgcgtaccggtgacaccatcgtcggcaag
atccgcccgccgaaggaaggcgagcgttacttcgccctgctcaaggtcgacagcatcaac
ttcgaccgtccggaaaacgccaagaacaagattctgttcgagaacctgacgccgctgttc
ccgaatcagcgcctgaccatggaagccggtaacggctccaccgaggacatcaccggccgc
gtgatcgacctctgcgcgccgatcggcaagggccagcgcggcctgatcgtcgccccgccg
aaagcgggcaagaccatcatgctgcagaacatcgcctcgaacatcacccgtaacaacccc
gagtgccacctgatcgttctgctgatcgacgagcgcccggaagaagtgaccgagatgcag
cgcaccgtgcgcggcgaagtggtcgcctccaccttcgacgagccgccgacccgccacgtg
caagttgccgagatggtcatcgagaaggccaagcgcctggtcgagcacaagaaggatgtg
gtcatcctgctcgactccatcacccgtctggcccgcgcctacaacaccgtgatcccgagc
tccggcaaggtgctcaccggtggtgtcgacgcccacgccctggagaagccgaagcgtttc
ttcggcgccgcgcgtaacatcgaagaaggcggctcgctgaccatcatcgccaccgcgctg
gtcgaaaccggctcgaagatggacgaagtgatctacgaggaattcaagggtaccggcaac
atggagctgcccctggatcgtcgcatcgccgagaaacgcgtattcccggccatcaacatc
aaccgcgccggtacccgccgcgaagagttgctgaccgccgaggatgagctgcagcgcatg
tggatcctgcgcaagctgctgcacccgatggacgagatcgccgccatcgaattcctgatc
gacaagctcaaagctaccaaaacgaacgacgagttcttcatgtccatgaagcgcaagtaa
DBGET
integrated database retrieval system
