Pseudomonas fulva: Psefu_0834
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Entry
Psefu_0834 CDS
T01501
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfv
Pseudomonas fulva
Pathway
pfv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psefu_0834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfv03019
]
Psefu_0834
Enzymes [BR:
pfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Psefu_0834
Messenger RNA biogenesis [BR:
pfv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Psefu_0834
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AEF20812
UniProt:
F6A8Y4
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All DBs
Position
903228..904556
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AA seq
442 aa
AA seq
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MTFASLGLIEPLLRCLDGLDYKTPTPVQAQAIGPVLKGRDIMAAAQTGTGKTAAFTLPIL
QRLMMEGPVVASNSVRALVLVPTRELAEQVQQSVQTYSQFLPLRSYAVYGGVSINPQMMK
LRKGLDVLVATPGRLLDLYRQSAVKFSQLQVLVLDEADRMLDLGFARELDELFAALPKKR
QTLLFSATFSDAIRGLAKEMLRDPLSIEVSPRNAAAKSVKQWLIPVDKKRKAELFLHLYR
SKKWSQVLVFAKTRKGVDELEQALLAEGIRADSIHGDKPQPTRLRALQRFKAGEVDVLVA
TDVAARGLDIDDLPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVQLLSAIE
ALIQQILQRVDEPDFIPDHRVPQTVAGGLVVKKPKKPKKPKVVGGGKAGGLGRWMESDEP
AEPPVKAIRKVPSFGGKPKGKR
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcgcttccctcggcctgatcgaacccctgctgcgctgcctcgacggcctcgat
tacaagaccccgacgcctgtccaggcccaggccatcggcccagtgctaaagggccgcgac
atcatggccgcggcgcagaccggcaccggcaagaccgccgcttttaccctaccgatcctg
cagcgcctgatgatggaaggcccggtggtggccagcaattcggtgcgtgccttggtgctg
gtgccgacccgcgagctggccgagcaggtgcagcagagcgtgcagacctactcgcagttc
ctgcccctgcgcagttatgcggtgtacggcggggtgagcatcaacccgcagatgatgaag
ctgcgcaagggcctcgacgtgctggtcgccacgccgggccgtttgctcgacctgtaccgt
cagagcgcggtgaagttttcccagctgcaggtgctggtgctcgacgaagccgaccgcatg
ctcgacctgggttttgcccgcgagctggatgagctgttcgccgccctgccgaagaaacgc
cagaccttgctgttctccgcgaccttttccgacgccatccgcggcttggccaaggaaatg
ctgcgcgacccgctgagcatcgaagtcagcccgcgcaacgccgccgccaagtcggtcaag
cagtggctgattccggtggacaagaagcgcaaggccgagctgttcctgcacctgtatcgc
agcaagaaatggtcgcaagtgctggtgttcgccaagacccgcaagggcgtcgacgaactc
gagcaggcgctgctggccgaaggcattcgcgccgattcgatccacggtgacaagccgcag
ccgacgcgcctgcgcgccctgcagcgtttcaaggccggcgaagtcgatgtgctggtggcc
accgacgtggctgcccgcggcctggatatcgacgacctgccgctggtggtcaacttcgac
ctgcccatcgtcgccgaagactacgtgcaccgcattggccgtaccgggcgcgcgggggcc
agcggccaggcggtatcgctggtctgcgccgacgaggtgcaactgctctcggccatcgaa
gcgctgatccagcagatcctgcagcgcgtcgacgaaccagactttatccccgaccaccgc
gtgccgcagactgtcgccggcggcctggtggtgaagaaaccgaagaaaccgaaaaagccc
aaggtggtcggcggcggcaaggccggtggcctgggccgctggatggaaagcgacgagccg
gccgaaccgccggtcaaggccatccgcaaggtgccgagtttcggtggcaagcccaagggc
aaacgttag
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