Pseudomonas fulva: Psefu_3960
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Entry
Psefu_3960 CDS
T01501
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pfv
Pseudomonas fulva
Pathway
pfv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pfv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Psefu_3960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfv03021
]
Psefu_3960
Transcription machinery [BR:
pfv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Psefu_3960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Ribosomal_60s
GrpE
Motif
Other DBs
NCBI-ProteinID:
AEF23916
UniProt:
F6AI90
LinkDB
All DBs
Position
4300311..4302158
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AA seq
615 aa
AA seq
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MSGKAQQQSRLKELISRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAVAHFPGTVDSILAEYTRVTTEGGRLVEVLSGYIDPDDGSVPAEAA
APVPASSDDKAEDKDDDEEDGDSDDEEEEGDGGPDPEEALRRFTAVSDQLEVAKKALKKH
GRDSKQAIEELRLLAELFMPIKLVPKQYDALVVRVREALDRLRGQERAIMQLCVRDARMP
RADFLRLFPGNEVDLDWAASLAKGKAKYAEAIGNLEADIQRCQQKLIALQDETELTLAEI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVE
SLKEATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPTRSEHLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcaatctcgtttgaaagaattgatcagccgtggtcgtgag
cagggttacctgacttacgcggaggtcaatgaccacctgccggaggatatttcagatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gctccggatgcggacgccctgttgttggccgaagccgacaccgacgaagccgctgccgag
gaagcagccgctgctctcgcggccgttgagaccgatattggccgtaccaccgacccggtg
cgcatgtacatgcgtgaaatgggtaccgtggaactgctgacccgcgaaggcgagatcgaa
atcgccaagcgtatcgaagaaggtatccgtgaagtcatgggcgctgtcgctcacttcccg
ggcaccgtcgacagcattctcgccgaatacactcgcgtcaccaccgagggcggccgcctg
gtcgaagtcctcagcggttacatcgatccggacgacggcagcgtgccggctgaagccgcc
gcccccgttcctgcctcttcggacgacaaggccgaagacaaggacgatgacgaggaagac
ggcgacagcgacgacgaggaagaagaaggcgatggcggcccggacccggaagaggccctg
cgccgcttcaccgcggtctccgatcagctggaagtcgccaagaaagccctgaagaagcac
ggtcgtgacagcaagcaggccatcgaagagctgcgcctgttggccgaactgttcatgccg
atcaagctggtgcccaagcagtacgacgcactggtggtgcgtgtacgtgaagccctggac
cgcctgcgcggccaggaacgagccatcatgcagctgtgcgtgcgtgatgcccgtatgccg
cgtgccgacttcctgcgcctgttcccaggcaacgaagtggatctggactgggccgccagc
ctggccaagggtaaagccaaatacgccgaagccatcggcaacctggaagcggacatccag
cgctgccagcagaagctgatcgccctgcaggacgagaccgagctgaccctggccgagatc
aaggacatcaaccgtcgcatgtcgatcggtgaagccaaggctcgtcgcgccaagaaggaa
atggtcgaggccaacctgcgtctggtcatctccatcgccaagaagtacaccaaccgcggc
ctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtggacaag
ttcgaataccgtcgcggttacaagttctcgacctacgccacctggtggattcgccaggcg
atcacccgctcgatcgccgaccaggcgcgcaccatccgtattccggtgcacatgatcgag
acgatcaacaagctcaaccgcatctcccgtcagatgcttcaggaaatgggccgcgagccg
actcccgaagagctgggcgagcgcatggaaatgcccgaggacaagatccgcaaggtgctg
aagatcgccaaagagccgatctccatggaaaccccgatcggcgacgacgaggattcgcac
ctgggcgacttcatcgaggacagcaccatgcagtccccgatcgacgtagccaccgtggaa
agcctcaaggaagccactcgcgaagtgctggccggcctcactgcccgtgaagccaaggtt
ctgcgcatgcgcttcggtatcgacatgaacaccgaccacaccctcgaggaagtgggcaag
cagttcgacgtcacccgtgagcgtatccgccagatcgaagccaaggcactgcgcaagctg
cgccacccgacccgtagcgaacacctgcgctcgttcctcgacgagtaa
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