Pseudomonas simiae PCL1751: PF1751_v1c12320
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Entry
PF1751_v1c12320 CDS
T03766
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pfw
Pseudomonas simiae PCL1751
Pathway
pfw03030
DNA replication
pfw03430
Mismatch repair
pfw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PF1751_v1c12320 (dnaE)
03430 Mismatch repair
PF1751_v1c12320 (dnaE)
03440 Homologous recombination
PF1751_v1c12320 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfw03032
]
PF1751_v1c12320 (dnaE)
03400 DNA repair and recombination proteins [BR:
pfw03400
]
PF1751_v1c12320 (dnaE)
Enzymes [BR:
pfw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PF1751_v1c12320 (dnaE)
DNA replication proteins [BR:
pfw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PF1751_v1c12320 (dnaE)
DNA repair and recombination proteins [BR:
pfw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PF1751_v1c12320 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
AJP50938
LinkDB
All DBs
Position
1397133..1400654
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG
IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV
AEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEH
LHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK
SAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYT
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFYDEP
KAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
IKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGELLKRHRGACPVTMEYTGSDAKAM
LQFGETWRIDPADGLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcacctacgcctgcacactgaatactccctggtcgacggcctg
gtacggatcaaaccgctggtcaaaaccctggtgggtatgaacatgcctgcggtcgcggtg
accgatcagaacaacatgtgttccctggtcaagttctacaagaacgccatgggcgccggt
atcaagccgatctgcggcgctgacctgtggctgtccaacaaagacccggataaccccctg
agccgtatcagcctgttggcgatgaacggcgtgggttatcgcaaccttaccgaactgatt
tcccgcggtttcatcgatggccagcgcaatggttcgatcatcatcgagcgcgaatgggtt
gccgaggccagcgaaggcctgatcatgctgtcggccgccaaagagggcgagatcggtatc
gcgctgctgggtggcaacccccaggaagctgaagtactggccaaggagtggatgcaggtc
ttccccgatcgcttttacctggaagtccagcgcaccaatcgccccaacgatgaagagcac
ctgcacgccgccgtggccctggccgacaagctgggggcgccactggtcgccaccaacgac
gtgcgctttatcaagaaggaagatttcgaggcccacgaaacccgcgtgtgcatcggtgaa
ggccgggccctggatgacccgcgccgctccaagaactacagcgaagagcagtacctcaag
agcgcggaggagatggccgagctgttcagcgacctgcccgaggccctggaaaactccgtc
gaaatcgccaaacgctgcaatatcgaagtgaagctgggcaaacactttttgcccaacttc
ccgattcccgatggcatgaccatcgatgagtacttccgcaaggtgtcgtttgatggtctg
gaggagcgtctttccgtcctgctgcccaaggacaccaccgaagattacgaggccaagcgc
caggtttatgtcgatcggctgaatttcgagctggatatcatcatccagatgggcttcccc
ggttacttcctgatcgtaatggactttatccagtgggccaaaaacaacggcgtaccggta
gggccgggccgggggtcgggtgccggctcgctggtggcctacgtgcagaagattaccgac
ctggatccgctagaatatgacctgctgttcgagcggttcctgaacccggaacgggtttcc
atgcccgacttcgacgtcgacttctgcatggacggccgtgaccgcgtgatcgaatacgtg
gccgagaaatacggccgcaacgcggtaagccagatcatcaccttcggttccatggcggcg
aaggctgtaattcgcgacgtggcgcgcgttcagggcaagtcctacggcctggcggatcgt
ctgtcgaagatgatcccgttcgaagtcggcatgaccctggaaaaagcctacgagcaggaa
gagatcctgcgcgacttcatcaagatcgatgaagaggccgccgaaatctgggacatggcc
cgcaagcttgaaggcgtggtgcgtaacgtcggtaaacacgccggcggtgtggtgatcgcg
cctacaaaactcaccgacttttcgccgatttattgcgatgaggaaggcggcggcctggtc
acccagttcgacaaggacgacgtggaggcggccggcctggtgaagttcgacttccttggc
ctgcgaaccctgacgatcatcgactgggcgctcaagaccatcaaccgcgaccgcgccaag
gtcaatgaagagccgctggatatcgcgtttatcccgctggacgacaaaccgacttacacc
ttgctgcaaaaagccgaaaccacggcggtgttccagcttgagtcgcggggcatgaaagag
ctgatcaaaaagctcaagcccgactgcctggaagacttgatcgcactggtggccctgttc
cgtccgggtccgctgcagtccggcatggtggacgacttcatcaaccgtaagcacggtcgc
gcggagctggcgtatccgcactccgactaccagtacgaaggcctcaagccagtactggcg
ccgacctacggcatcatcctgtatcaggaacaggtgatgcagatcgcccaggtgatggcc
ggctataccctcggcggcgcggacatgctgcgtcgagccatgggtaagaaaaaacccgaa
gagatggccaagcagcgcggcggtttcattgagggttgcgcgaccaacaatatcgacgcg
gacctggccggtaacattttcgacctggtggaaaaattcgccggttatggcttcaacaaa
tcccactccgccgcgtacggcctggtgtcgtaccagaccgcctggctaaaagcgcactac
ccggcgcctttcatggcggcggtactctcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaggaagtgcgcaccatgaagctgcgtctcgacgcaccggacgtgaacgcc
tcggagttcaaattcacggtaaacgacgaaggccgcattatttatgggttgggcgcgatc
aagggggtgggtgaaggcccggtggaagccatcaccgaagcgcgccaggacggacccttc
aaggatctgttcgacttctgcgcgcgggttgacctcaagcgcatcaacaaacggaccctc
gatggtctgatccgtagcggtgcgctcgaccgtctcggcccgtatttttacgacgagccc
aaggcttaccaggcgaatatcgaccggaaccgtgcggtattgctcaccgccatggaagaa
gcgatcaaggccgccgaacaaaccgcccgtacccacgacagcggccacgccgatctgttt
ggcggtttgttcgtcgaagaggatgccgatgtatatggcaaccatcgcaaggccaaggag
ctgacgctcaaggagcgcctcaagggtgagaaagacaccctgggcctgtacctcaccggc
cacccgattgacgaatacgaaggtgaaatccgccgtttcgcccgtcagcgaatcatcgac
ctgaaacctgcgcgggatacccagaccgtcgccggcatgatcatcgccctgcgggtgatg
aagaataaaaagggcgacaagatggggttcatcaccctcgacgaccgttcggggcgcatc
gaagcctcgctgttcgccgacgcgttccactccgcgcagtcgctgttgcagaccgacgcc
atggtggtagtggaaggggaggtcagcaacgatgacttctccggcggcctgcgcctgcgg
atcaagcgggtgatgagcatggaagacgcgcgcaccaatctggccgaaagcctgcgcttg
aaggtgaaaaccgaggcgctcaagggcgatcagctacgctggttgggtgagttgctcaaa
cgccaccgtggcgcgtgcccggtgaccatggagtacaccggcagtgacgccaaggccatg
ttgcagtttggggagacctggcgaatcgatccggctgatggcttgattcaagcattgcgt
gaccagttcggccgtgacaacgtcttcctccaataccgttga
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