Pseudomonas simiae PCL1751: PF1751_v1c15420
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Entry
PF1751_v1c15420 CDS
T03766
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pfw
Pseudomonas simiae PCL1751
Brite
KEGG Orthology (KO) [BR:
pfw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfw03032
]
PF1751_v1c15420 (topA)
03400 DNA repair and recombination proteins [BR:
pfw03400
]
PF1751_v1c15420 (topA)
Enzymes [BR:
pfw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PF1751_v1c15420 (topA)
DNA replication proteins [BR:
pfw03032
]
Prokaryotic type
DNA Topoisomerases
PF1751_v1c15420 (topA)
DNA repair and recombination proteins [BR:
pfw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PF1751_v1c15420 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AJP51247
LinkDB
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Position
1719374..1721995
Genome browser
AA seq
873 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLSPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGAN
VRFEVAREKGEAFKPLNEAQAMAALEKLKSSSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVAMARTYIEEEFGKKYLPEKPN
VYSSKEGAQEAHEAIRPSDANTTPAKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
TVAASDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDTLKLITLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESPESGMRANQPVMT
DIPCQTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCNGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVLEIVPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQTEVDGKPTGWKAFYDGGKWKVEDKRQGA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggcaacgagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagtaaggagccagccgccaagcgcggcaaggcggctgcgggcgaa
ggtccggtgctcagccctaaagagaaagcgcgcaagcagctggtctcgcgcatgggtgtg
gacccggatcatggctggaaggccaagtacgaaatccttccaggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaggatgccgacaccatctatctcgcaacggacttggac
cgcgaaggggaagccattgcctggcacctgcgggaagccatcggcggcgacgacagccgc
tacaagcgtgtggtgttcaacgaaatcaccaagaaggccatccaagaggccttctccaaa
cccggcgaactggacatcgaccgcgtcaacgcccaacaggcccgtcgtttcctcgaccgc
gtcgtgggttacatggtctcgccactgctgtgggccaagatcgcccgtgggctgtccgcc
ggccgtgtgcaatcggttgcggtgaagctggtggtggagcgtgagcgcgaaatccgtgcg
ttcatccccgaagagtactgggaagtccacgccgatctgggcactgccaagggcgccaac
gtgcgctttgaagtggcccgcgagaaaggcgaggccttcaagccgctgaacgaagcccag
gccatggcggcgctggaaaagctcaagtcttccagttacagcatcgtcaagcgtgaggac
aagccgaccagcagcaagccatcggcaccgttcatcacctccaccctgcaacaggccgcg
agcaaccgcctgggctttggggtgaagaaaaccatgatgatggcccagcgcttgtacgaa
gccggctacatcacttacatgcgtaccgactccaccaacctgtcggtggacgcggtcgcg
atggcgcgtacttatattgaagaagagttcggcaagaagtacctgcccgagaaaccgaac
gtctacagcagcaaggaaggcgcacaagaggctcacgaagcgatccgtccttccgacgcc
aataccacgcctgccaagctgagcggcatggagcgcgacgctgagcgcctctacgagctg
atctggcgccagttcctggcctgccagatgctgccggcgcaatacctgtccaccaccgtc
acggtggcggcttctgacttcgagctgcgtgccaagggccgtatcctcaagttcgacggc
tatacccgtgtgatgccgcaaatcgccaagcctggcgatgacgatgtgctgccggacatg
gcccagggcgatacgctgaagctgatcacgctcgacccgtcccagcacttcaccaagccg
ccggcgcgttattcggaagccagcctggtgaaagagatggaaaaacgcggtatcggtcgt
ccttcgacctacgcggcgatcatctccaccattcaggaccgtggctacgttgcgctgcac
aaccgtcgtttctattcggaaaagatgggcgacatcgtcaccgaacgcctgtcggaaagc
ttctccaacctgatggactacggcttcaccgccggcatggaagagaacctcgatgacgtg
gcccagggcgaacgcgattggaaaaacgtgctggacgagttctacggcgacttcaagaaa
aaactcgaagtagctgaaagccctgaaagcggtatgcgcgccaatcagccggtgatgact
gacatcccgtgccagacctgcggccgcccgatgcagattcgtacggcgtccaccggcgtg
ttcctcggttgctcgggctacagcctgccgccgaaagagcgctgcaaggccaccgtcaac
ctggtgccgggtgacgaaatcgctgccgatgacgagggggaatccgagtcgctggtactg
cgtggcaagcaccgttgcccaatctgcagcacggcgatggacgcctacctgctggatgaa
aagcacaagctgcatatctgcggtaacaacccggattgcaacggctacgagattgaagag
ggcacctatcgcatcaaaggctacgaaggtccgagcctggaatgcgacaagtgtggcagc
gagatgcagctcaagactggccgtttcggcaagttcttcggctgcaccaacccgacgtgc
aagaacacccgcaaactgctgaaaagcggtgacgcggcgccgccgaagatggacccggtg
aagatgcctgaactcaagtgtgagaaggtcaacgacacctacatcctgcgtgacggcgct
tcggggctgttcctggctgccagccagttcccgaaaaaccgcgagacccgtgcaccgctg
gtgctggagatcgtgccgcacaaggacgagatcgatccgaagtaccacttcctgtgtgaa
gcgccgaagaaggatccggatggtcgcccagccgtgatccgttacagccgcaagaccaag
gagcagtacgtgcagaccgaagtggacggcaagcctactggctggaaagcgttctacgac
ggcggcaagtggaaggtcgaggacaagcgccagggcgcttga
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