Pseudomonas simiae PCL1751: PF1751_v1c42070
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Entry
PF1751_v1c42070 CDS
T03766
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
pfw
Pseudomonas simiae PCL1751
Pathway
pfw03030
DNA replication
pfw03430
Mismatch repair
pfw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PF1751_v1c42070 (holB)
03430 Mismatch repair
PF1751_v1c42070 (holB)
03440 Homologous recombination
PF1751_v1c42070 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfw03032
]
PF1751_v1c42070 (holB)
03400 DNA repair and recombination proteins [BR:
pfw03400
]
PF1751_v1c42070 (holB)
Enzymes [BR:
pfw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PF1751_v1c42070 (holB)
DNA replication proteins [BR:
pfw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PF1751_v1c42070 (holB)
DNA repair and recombination proteins [BR:
pfw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PF1751_v1c42070 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
AAA
AAA_5
HolB_lid
nSTAND3
iSTAND
TsaE
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AJP53902
LinkDB
All DBs
Position
complement(4675908..4676897)
Genome browser
AA seq
329 aa
AA seq
DB search
MAEAYPWQDSLWQQLAGRAQHAHAYLLHGPVGIGKRDLAERLMASLLCQRPVNLEACGEC
KSCLLLKAGSHPDNYLLEPEEADKAIKVDQVRDLVSFVVQTAQMGGRKVVLIEPVEAMNI
NAANALLKSLEEPSGDTVLLLVSHQSSRLLPTIRSRCVQQACPLPSEAMSLEWLAQALPA
CSQDERVELLTLAAGSPLAAVKLQAQGVREQRALVVDGVKKLIKQEVSATQLAESAWKDI
PLLLLFDWFCDWSSLILRYQLTQDESGLGLPDMRKVVQYLAQKSAQDKVLTIQDWILAQR
QKVLGKANLNRVLLLEALLVQWVGLLGRR
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaagcctacccgtggcaggacagcctgtggcaacaactggccggccgtgcccag
cacgcccacgcctacctgttgcatgggccggtgggtatcggtaaacgtgacctggccgag
cgcctcatggctagcctgctgtgccagcgcccggtcaacctggaagcctgcggcgagtgc
aaatcctgcctgctgctcaaggccggcagccacccggataactacctgttggaacccgag
gaagccgacaaggcgatcaaggtcgaccaagtgcgcgacctcgtcagctttgtggtgcag
accgcgcagatgggcgggcgcaaagtcgtgttgatcgagccggtggaggcgatgaacatc
aacgccgccaacgccttgctcaagagcctggaggaaccgtccggcgacaccgtattgttg
ctggtcagccaccagtccagccgcttgttgccgaccattcgtagccgctgcgtgcagcag
gcgtgcccgctgccgagcgaggcgatgagcctcgaatggctcgcgcaggcgttgccggcg
tgcagccaggatgaacgggtcgagctgctgaccctggcggccggctcgcccctggcggcg
gtgaagctgcaagcccagggcgtgcgtgagcaacgcgcgctggtggtggatggcgtgaag
aaactgatcaagcaggaagtgtctgccactcaactggccgaaagtgcctggaaggacatt
cccctgttgttgctgttcgactggttctgcgattggtcgagcctgatcctgcgctaccag
ctgactcaggatgaaagtggcctgggcttgccggatatgcgtaaggtggtgcagtacctg
gcgcagaaaagtgcccaggacaaggtgctgacgatccaggactggatcctcgcccagcgc
cagaaggtgctcggcaaggccaacctcaaccgcgtgctgttgctcgaagcgctgctggtg
cagtgggtcggcttgcttggccgccgttaa
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