Pseudomonas simiae PCL1751: PF1751_v1c46620
Help
Entry
PF1751_v1c46620 CDS
T03766
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pfw
Pseudomonas simiae PCL1751
Pathway
pfw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PF1751_v1c46620 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfw03400
]
PF1751_v1c46620 (recD)
Enzymes [BR:
pfw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PF1751_v1c46620 (recD)
DNA repair and recombination proteins [BR:
pfw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PF1751_v1c46620 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
SH3_13
NAT10_TcmA_helicase
AAA_22
Viral_helicase1
UvrD-helicase
SLFN-g3_helicase
AAA_16
AAA_17
T2SSE
NTPase_1
AAA_28
AAA_25
AAA_5
NACHT
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AJP54356
LinkDB
All DBs
Position
complement(5163507..5165576)
Genome browser
AA seq
689 aa
AA seq
DB search
MSLLPLPLEELTPLSRAADLVQLLERWVDRGWLRALDKAFVGFLHELDPQADPLMLLAAA
LTSHQLGHGHVCLDLFETLKAPDFALSLPPEGDLQTGAMLLPSQLLDGLDGAHWCHALAA
SHLVALAVDGRESAQSRPLVLSGKRLYLRRYWTYERRIDTALRLRLATQESVAADLPQRL
NSLFDQPPPDGVIDWQKLACALATRGAFSIVTGGPGTGKTTTVVRLLALLQAPAVDVGSP
LRIRLAAPTGKAAARLTESISQQVLSLKVPDSVKEKIPTQVTTVHRLLGSRPGTRHFRHH
IGNPLPLDVLVVDEASMIDLEMMANLLDALPPHARLVLLGDKDQLASVEAGAVLGDLCRD
AEAGFYSAETRQWLQAVSGEDLSASGLQEDFDGSHPLAQQVVMLRYSRRFGEGSGIGQLA
RWVNQQNPEEARKLLAARSHDDLFCVSLKGEHDHALERLVLDGQGEGAEGYRYYLNLLQS
ARPSPETPRESDAWTHWAQQLLQAFDAFQLLCAVRKGPWGVEGLNLRITAALRKVRLIDG
DEQWYEGRPVLMTRNDYGLGLMNGDIGIALKLPESDGGPQVLRVAFPRNDGQGGVRFVLP
SRLNDVETVYAMTVHKSQGSEFTHTALILPDALSPVLTKELIYTGITRAKRWFSLIEPRG
GVFEEAVRRKVKRLSGLMLELGHESEKTD
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgttgccgttaccgctggaggaactgacgcccctcagccgcgccgccgacctg
gtgcaattactggaacgttgggtcgaccgtggctggttgcgtgccttggacaaagccttt
gtcggtttcctgcacgagcttgatccacaggcggacccgctgatgctactggccgccgcg
ctgaccagccatcaattgggccacggccatgtctgccttgacctgttcgaaaccctcaag
gcgccggatttcgccctgtcgttgccgcctgaaggcgacctgcaaaccggcgccatgctg
ctgccgtcgcagttgctcgacggcctggacggcgcccactggtgccatgctctggccgcc
agtcacttggtggcgttggcagtcgatggccgcgaatccgcccaaagtcgccctttggta
ctctccggcaagcgcctgtacctgcgccgctactggacctacgaacggcgcatcgacacc
gccctgcgcctgcgtctcgctactcaggagagtgtcgccgctgatttgccgcagcgcctc
aacagcctgttcgaccaaccaccgcccgacggcgtgatcgactggcaaaaactcgcctgc
gcgttggccactcgcggcgcattcagcatcgtcaccggcggccccggcactggcaagacc
accaccgtggtgcgcttgctcgcgctgttgcaggcgccggctgtggacgtcggcagccca
ctgcgcattcgcctggccgcgcccaccggtaaggccgccgcacgcctcaccgagtccatc
agccaacaagtgctgtcgctgaaagtgcctgacagcgtgaaggaaaaaatcccaacccag
gtcaccaccgtccaccgcctgctgggcagtcgtccgggcacgcggcattttcgtcatcac
atcggcaacccattgccgctggatgtgctggtggtggacgaagcctcaatgatcgacctg
gaaatgatggccaacctgctcgacgccttgccgccccatgcacgcctggtgctgttgggc
gacaaggaccaactggcgtcggtagaagcgggcgccgtgctcggtgatttgtgccgcgac
gccgaagccggtttctacagcgccgagacgcgccaatggctgcaggccgtcagcggtgaa
gacctcagcgccagcggcctgcaggaagacttcgacggcagccatcccctggcccagcaa
gtggtgatgctgcgttactcgcgacgtttcggcgaaggcagtggcatcggccaactggcg
cgctgggtcaaccagcaaaaccctgaagaagcccgcaaactgcttgccgcgcgcagtcac
gatgatctgttttgcgtcagtctcaagggcgaacacgatcacgccctggaacgcctggtg
ctggacgggcagggcgagggtgccgagggctatcgctattacctcaacctgttgcaaagc
gcgcgtccgtcgccggaaacaccgcgtgaaagcgacgcctggacccactgggcgcaacaa
ctgctgcaagctttcgacgcgttccaactgctctgcgcggtacgcaaaggcccctggggc
gtggaaggcctgaacctgcgcatcaccgccgccctgcgcaaggtacggctgatcgacggc
gacgaacaatggtacgaggggcgcccggtgctgatgacccgtaacgattacggcctgggc
ttgatgaacggtgacatcggcatcgccctcaaattgcccgaaagcgacggcggtccccag
gtgctgcgcgtggctttcccgcgtaacgacggccagggcggcgtgcgttttgtgttgccc
agccgtttgaacgatgtggaaaccgtgtacgccatgaccgtgcataaatcccagggctcg
gaattcacgcataccgcgctgatcctgccggatgcgttgagcccggtgctcactaaagag
ctgatctacaccggcatcactcgggccaagcgttggttcagcctgatcgagccccgaggc
ggcgtgtttgaagaagccgtcaggcgtaaggtcaagcgtttgagtgggttgatgctggag
ttgggtcacgaatcagaaaaaactgactga
DBGET
integrated database retrieval system
