Pseudomonas simiae PCL1751: PF1751_v1c47000
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Entry
PF1751_v1c47000 CDS
T03766
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pfw
Pseudomonas simiae PCL1751
Pathway
pfw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PF1751_v1c47000 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfw03019
]
PF1751_v1c47000 (pnp)
03016 Transfer RNA biogenesis [BR:
pfw03016
]
PF1751_v1c47000 (pnp)
Enzymes [BR:
pfw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PF1751_v1c47000 (pnp)
Messenger RNA biogenesis [BR:
pfw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PF1751_v1c47000 (pnp)
Transfer RNA biogenesis [BR:
pfw03016
]
Prokaryotic type
tRNA degradation factors
PF1751_v1c47000 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AJP54393
LinkDB
All DBs
Position
complement(5217304..5219409)
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVTVLVTVVGAKTADPSKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQKASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIKAVTELAAEAAKPTWTWAPQAEA
TELLGAIRSEFGAAISDAYTITVKADRYARLGELKDQVVAKLSGEEGQPSASDVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSIAAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggttatcaaaaaattccagttcggtcagtcgaccgttaccctcgagacaggc
cgtatcgcccgtcaagcctccggcgcagtgctggttaccgttgacgacgacgttaccgtt
ctggtgaccgttgttggcgccaagaccgctgacccgagcaaaggcttcttccctctttcc
gttcactaccaggaaaagacttacgctgccggtaagatccctggcggtttcttcaagcgc
gaaggccgtccttccgagaaagaaaccctgacttcccgactgatcgaccgtccgatccgt
ccgctgttcccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtcgtttccacc
agcaaaaagaccgatccggacatcgctgcgatgatcggtacttcggctgccctggcgatc
tccggcattcctttcgatggtccgatcggcgcagcccgcgttgctttccacgaaagcacc
ggctacctgctgaacccgacttacgagcaacagaaagcttcgagcctggacatggtcgtc
gccggtacctcggaagccgtgttgatggttgaatcggaagccaaagagctgaccgaagac
cagatgttgggtgccgtactgttcgcgcacgacgagttccaggccgttatcaaggccgtc
accgagctggccgcagaagctgccaagccaacctggacctgggctccacaagccgaagcc
accgagctgctgggcgctatccgctccgagttcggcgctgccatctccgacgcctacacc
atcaccgtcaaggccgaccgttacgctcgtctgggcgagctgaaggatcaggttgttgcc
aagctgtccggtgaagaaggccagccttccgccagcgacgttaaagcggctttcggtgaa
atcgaataccgtaccgttcgcgaaaacatcgttaacggcaagccacgtatcgacggtcgt
gacacccgcaccgtacgtccgctgaacatcgaagttggcgttctgccaaagactcacggt
tcggcgctgttcacccgtggtgagactcaggctctggtcgtcgcgaccctgggcaccgcc
cgtgacgcacaattgctggacaccctggaaggcgagaaaaaagacccgttcatgctgcac
tacaacttcccaccgttctcggtaggtgagtgtggtcgcatggggggcgctggtcgtcgc
gaaatcggtcacggccgtctggcccgtcgttcgatcgcggccatgctgcctgccgctgac
gtgttcccgtacaccatccgtgtggtctcggaaatcaccgaatccaacggttccagctcc
atggcgtccgtttgcggtgcttccctggcgctgatggatgctggtgtgccgatgaaggca
ccggttgccggtatcgccatgggcctggttaaagaaggcgagaagttcgccatcctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaagtagccggtaccgcc
aaaggtgtgaccgcgctgcagatggacatcaagatcaagggcatcaccgaagagatcatg
gaaatcgccctgggccaagccctggaagcgcgcctgaacatcctcggccagatgaaccag
atcattggtcagtcgcgtaccgagctgtcggaaaatgctccgaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgatgtcatcggtaaaggcggcgcgactatccgtgcgatc
tgcgaagagaccaaggcttcgatcgacatcgaagacgatggctcgatcaagatcttcggc
gaaaccaaggaagcggctgaagcagcacgtcagcgcgtactgggcatcaccgcagaagcc
gagatcggcaagatctacgtgggtaaggttgaacgcatcgtcgacttcggtgcattcgtc
aacatcctgccgggcaaggacggtctggttcacatctccatgctgagcgacgctcgcgtt
gagaaagtgaccgacatcctgaaagaaggccaggaagtggaagtgctggtgctggacgtg
gataaccgcggccgtatcaagctgtccatcaaggacgtagcagcagccaaggcttcgggc
gtttaa
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