Pseudomonas simiae PCL1751: PF1751_v1c48560
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Entry
PF1751_v1c48560 CDS
T03766
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pfw
Pseudomonas simiae PCL1751
Brite
KEGG Orthology (KO) [BR:
pfw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pfw03000
]
PF1751_v1c48560
Transcription factors [BR:
pfw03000
]
Prokaryotic type
Helix-turn-helix
Other families
PF1751_v1c48560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
PAS_4
AAA_5
HTH_23
PAS_9
AAA_2
HTH_30
HTH_7
HTH_50
PAS_8
HTH_17
HTH_28
HVO_A0261_N
HTH_22
RWP-RK
Diguanyl_cycl_sensor
HTH_AraC
Mga
nSTAND3
AAA
HTH_20
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
AJP54549
LinkDB
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Position
complement(5390008..5391906)
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AA seq
632 aa
AA seq
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MHNDHFSRHAQQVLTVAHGRDPSSDPSIARSWLRCLEDYHLDPAQTIAPTVLEHGRLLES
RERLQQVLHIAGSEMNSLHQQLSGAGHAVLLTDARGVILNCVTAPSERKIFERAGLWLGA
DWSEACEGTNGIGTCLVERQSLTIHRDEHFRGRHTGLTCSASPVFDPQGDLLAVLDVSSA
REAVSRQSQFHTMALVNLSAKMIESCYFLRHFEHHWLLRFHLQAESVGLFSEGLLAFDGD
GRICAVNQSALNLLGQVRGGLLGHPVEAFFDCSLDQLLGRASANATASWPLRTRDGRQLF
AALRGQVRSASTPFVQPEPAPLPGICLGDPTLQQDFRKALRVFERDVPLLINGETGSGKE
AFAKAVHLASQRANKAFVALNCAAIPESLIESELFGYRGGSFTGARKEGMQGKLQQADGG
TLFLDEIGDMPLALQTRLLRVLEDRLVVPLGGEPQAVNVRIISATHRNLLERVQDGSFRE
DLYYRLNGLEVGLPPLRERSDKAQLLDFLLTQEANGEPVALDPSARGALLAFAWPGNVRQ
LRTVLRTLVALCDEGRVGLEDLPAQIRQVRPVAVAQTKPLESPLEDAERLALLTALQQQR
WHMTHTAEQLGVSRNTLYRKLRRHGIARHALS
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgcacaacgatcatttcagccgccatgcccagcaagtcctcaccgtggcgcatggccgc
gacccgtccagcgatccgtccatcgcccgctcctggctgcgttgcctggaggactatcac
ctcgaccctgcgcaaaccattgcacccactgtgctcgaacacggtcgcttgctggaaagc
cgcgagcgcctgcagcaagtgctgcacattgccggcagcgagatgaacagcctgcatcag
cagctctccggtgcggggcatgctgtgttgctgaccgatgcgcgcggcgtgatcctcaac
tgtgtcaccgcgccgtccgagcgcaagatcttcgagcgcgccgggttgtggctgggtgcc
gattggagcgaggcctgcgaaggcaccaacggcatcggcacctgcctggtggagcgccaa
tccctgaccattcatcgtgacgaacacttccggggccggcacaccgggctgacctgctcg
gcgagcccggtgttcgatccgcagggtgatctgctggccgtgctggatgtgtcctccgca
cgggaggccgtgtcgcgccagagccagttccacaccatggcgttggtgaacctgtcggcg
aagatgatcgagagttgctacttcctgcgtcactttgaacaccactggttgctgcgtttt
cacttgcaggcggagtcggtggggttgttcagtgaagggttgctggcattcgacggagac
gggcgcatctgtgcggtcaaccagagcgcgctgaacctgttgggccaggtgcgtggcggt
ttgttggggcacccggtggaagcgttttttgattgctcactggatcaactgcttggccgc
gccagcgccaatgccacggccagttggccgctgcggacccgtgatgggcgacagttattt
gccgcgctgcgtggccaagtgcgcagcgcatcgacacctttcgtccagcctgagcccgct
ccgttgcccggtatttgcctgggcgatccgacgctgcaacaggactttcgcaaggcgctg
cgggtattcgagcgtgatgtgccgctgttgatcaatggcgaaaccggctccggcaaagag
gccttcgccaaggcggtgcacctggcgagccagcgtgccaacaaggcgttcgtcgcactc
aattgcgccgccatcccggaaagcctgatcgaaagcgaactgttcggctatcgcggcggc
agcttcaccggtgcgcgcaaagagggcatgcaaggcaaattgcagcaagccgatggcggc
accctgttcctcgatgaaatcggtgatatgcccctggcgctgcaaacccgcctgttaagg
gttctggaagatcggctggtggtgccgctcggcggtgagccccaggcggtgaacgtacga
attatcagcgcgactcaccggaatttgctggagcgtgtgcaggacggtagctttcgcgag
gacctgtattaccggctcaatggcctggaagtcggtttgccgcctttgcgcgagcgcagt
gataaagcccagttgctggatttcctgctgacccaggaggccaatggtgagccggttgcc
ctcgacccgtcggcgcggggagcgttgttggcgtttgcctggccggggaacgtccgccag
ctgcgcacggtgctgcgcaccttggtggcgctgtgtgatgaggggcgtgttggcctggaa
gatttgcctgcgcagattcgtcaggtcaggcccgtggcagtcgcgcagaccaaaccgctg
gagtcgccgctggaagacgccgagcgcctggcgttgctcacggcgttgcagcagcagcgc
tggcacatgacgcacacggcggagcaactgggcgtcagccgcaacacgctgtatagaaag
ctgcgccggcatggcatcgcgcgtcacgccctcagctaa
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