Pseudomonas simiae PCL1751: PF1751_v1c50170
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Entry
PF1751_v1c50170 CDS
T03766
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pfw
Pseudomonas simiae PCL1751
Pathway
pfw02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pfw00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PF1751_v1c50170 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfw03021
]
PF1751_v1c50170 (rpoD)
Transcription machinery [BR:
pfw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PF1751_v1c50170 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AJP54709
LinkDB
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Position
5558864..5560714
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AA seq
616 aa
AA seq
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MSGKAQQQSRIKELIVLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEA
APDKDSLMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAAE
VPPPVDAKAAKADDDTEDDDAEASGDDEDEVESGPDPIIAAQRFGAVSDQMEITRKALKK
HGRANKQAIAELVALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARM
PRADFLRQFPGNEVDESWTDALAKGKAKYAEAIGRLQPDIIRCQQKLTALETETGLTIAE
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcgttctcggtcgtgag
cagggttacctgacttacgcggaggtcaacgaccacctgcctgaggatatttcagatcca
gagcaggtggaagacatcatccgcatgattaacgacatggggatcaacgtattcgaagct
gcgccagataaggattcccttatgctggcggacgccgataccgacgaggctgccgctgaa
gaagctgctgccgcgctggccgctgtggagaccgatatcggtcgtaccaccgaccctgtg
cgcatgtatatgcgtgaaatgggtaccgtcgagctgctgacacgcgaaggcgaaatcgaa
atcgccaagcgtatcgaagagggtatccgtgaagtgatgggcgcaattgcgcacttccct
ggcacggttgaccacattctctccgagtacacccgcgtcaccaccgaaggtggccgcctg
tctgacgtcctgagtggctacatcgatccggacgacggcatcgcgccgcctgccgccgaa
gtgccgccgcctgttgatgccaaggctgcgaaagcggacgacgacaccgaagacgacgac
gctgaagccagcggcgacgatgaagatgaagttgaaagcggtccagacccgatcatcgct
gcccagcgtttcggtgcggtttccgatcaaatggaaatcacccgcaaggccctgaaaaag
cacggtcgtgccaacaagcaggcgattgccgagctggtggccctggctgagctgttcatg
ccgatcaagctggtgccgaagcaattcgaaggcctggttgagcgtgtccgcagcgccctg
gagcgtctgcgtgcccaagaacgcgcaatcatgcagctgtgtgtgcgtgatgcccgtatg
ccgcgtgccgacttcctgcgccagttcccgggcaacgaagtagatgaaagctggaccgac
gcactggccaagggcaaggcgaaatacgccgaagccattggtcgcctgcaaccggacatc
atccgttgccagcagaagctgaccgcgcttgagaccgaaaccggtctgacgattgccgag
atcaaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaa
gagatggttgaagcgaacttgcgtctggtgatctccatcgccaagaagtacaccaaccgt
ggcctgcaattcctcgacctgatccaggaaggcaacatcggcttgatgaaggctgtggac
aagttcgaataccgtcgcggctacaagttctcgacttatgccacctggtggatccgtcag
gcgatcactcgctcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgtatttcccggcagatgttgcaggaaatgggtcgcgaa
ccgaccccggaagagctgggcgaacgcatggaaatgcctgaggataaaatccgcaaggtg
ttgaagatcgctaaagagccgatctccatggaaaccccgattggtgatgacgaagactcc
catctgggtgacttcatcgaagactcgaccatgcagtcgccaatcgatgtcgccaccgtt
gagagcttgaaagaagcgactcgcgacgtactgtccggcctcactgcccgtgaagccaag
gtactgcgcatgcgtttcggcatcgacatgaataccgaccacacccttgaggaagtcggt
aagcagtttgacgtgacgcgtgagcggatccgtcagatcgaagccaaggcgttgcgcaag
ttgcgccacccgacgcgaagcgagcatctgcgctccttcctcgacgagtga
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