Pseudomonas simiae PCL1751: PF1751_v1c51460
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Entry
PF1751_v1c51460 CDS
T03766
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfw
Pseudomonas simiae PCL1751
Pathway
pfw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PF1751_v1c51460 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfw03019
]
PF1751_v1c51460 (rhlE)
Enzymes [BR:
pfw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PF1751_v1c51460 (rhlE)
Messenger RNA biogenesis [BR:
pfw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PF1751_v1c51460 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AJP54838
LinkDB
All DBs
Position
5707237..5709117
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AA seq
626 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGGGGG
RRDKGKDKGKEKSASGRGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEFLDDDVD
NFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAGAPRGGQPQGGRQNGPRNSSGGTTGTPPA
KRNGPRNGAPRDGQARREDSRSNNRRPARDDQQRSSEPAVQNPRGGPAPKIIHKESKADR
FPTPEQLDQLPGRPRGEKPALLTRNR
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggctcagacaggtactggtaaaaccggcggcttcgccctcccgattctg
gagcggttgtttcccaatggtcacccggacaaatcccagcgtcacggcccgcgccaaccg
cgtgttctggtcctgacccccacccgcgaactcgccgcccaggtgcacgacagcttcaag
ctgtatgcccgcgatttgaagttcgtcagcgcctgtatcttcggcggcgtcggcatgaac
ccacaggttcaggccatgtcccgtggtgtggacgtgctggtcgcgtgcccaggtcgtttg
ctcgacctgtgcggccaaggcagcgtcgacctgtcccacgtggaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaaaaaggtgctcgcccgc
ctgccggccaaacgtcagaacctgctgttctcggcaacgttctcccaggacatcactgcc
ctggccggcaagctgctgcacaacccggaacgcatcgaagtcacgccgccgaacaccacg
gtcgagcgtatcgagcaacgcgtattccgcctggccgccagccacaagcgtgcgctgctg
gcccacctgatcaccgccggcgcgtgggaacaggtgctggtcttcactcgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctcaccgccgtcgccattcac
ggcaacaagagccagaacgcgcgcaccaaggccctggccgatttcaaggccggttccgtg
cgcatcctggttgccaccgatatcgccgcccgcggcctggatatcgaccaattgccacac
gtggtcaacttcgagctgccaaacgtcgatgaagactacgtgcaccgtatcggccgtacc
ggccgtgccggtcgttcgggtgaagccatctccctggttgcaccggacgaagaaaaactg
ctgaaaagcatcgaacgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gatgccagcgccgtggaggccgagaagcctgaagcgcgcgagcgtccggacgtgcgcaac
ccgcgcaacccacgcggtccgaagggcgatggcccgaacggcggcgggggtggcggtggc
cgtcgcgacaagggcaaagacaagggcaaggaaaaatctgccagcggccgtggcgaacgc
ccggcccgtgagcagaagccccgcgaaggcactccggcccgcgaacagcgccagccgagc
cagccgccacgcgctgctgccgaccgtgctccggacgagttcctggacgacgatgtggat
aacttcggtaaccgcgtcgactacgtgccccaggccaagccggcccaaggccgtggccgt
cgcccaggcgccccggcacagggcgctggcgcaggtgctccccgtggcggccagccacaa
ggtggtcgtcagaatggtccacgcaacagcagcggcggcactaccggtacgccgccagcc
aagcgcaatggcccgcgtaacggcgcgccgcgtgatggccaggctcgccgcgaagactcg
cgcagcaacaaccgccgcccggcccgtgacgaccagcaacgttcgtccgagccagccgtg
cagaaccctcgtggtggtccggcgccaaagatcatccacaaggagtcgaaggctgatcgc
ttcccgacacccgagcagttggatcaactgccaggccgtcctcgtggtgaaaaaccagcg
ctgctgacgcgcaatcgctga
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