Pseudomonas simiae PCL1751: PF1751_v1c53110
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Entry
PF1751_v1c53110 CDS
T03766
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pfw
Pseudomonas simiae PCL1751
Pathway
pfw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PF1751_v1c53110 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfw03021
]
PF1751_v1c53110 (rho)
03019 Messenger RNA biogenesis [BR:
pfw03019
]
PF1751_v1c53110 (rho)
Transcription machinery [BR:
pfw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PF1751_v1c53110 (rho)
Messenger RNA biogenesis [BR:
pfw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PF1751_v1c53110 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AJP55003
UniProt:
A0A075P9Z7
LinkDB
All DBs
Position
complement(5874655..5875914)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLQLAEEMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLIDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgacctgctccagctggccgaagaa
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctgaaa
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctccgctctgctgacgcctcctatcttgccggcccagacgatatctac
gtctcgccgagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctccgaaggaaggcgagcgttacttcgccctgctcaaggtcgacacgatcaac
ttcgatcgtcccgagaacgcgaagaacaagattctcttcgagaacctgaccccgctgttc
ccgaccgtgcgcatgaagatggaagccggtaacggttccaccgaagacttgaccggtcgt
gtgatcgacctgtgcgccccgatcggcaaaggccagcgtggtctgatcgttgcaccgccg
aaagccggtaagaccatcatgctgcagaacattgcagcgaacatcgcgcgtaacaatcct
gaagttcacctgatcgtgctgttgatcgatgagcgtccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctccacgttcgatgaaccgccaacccgtcacgta
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgaacacaagaaggacgtg
gtgatcctgctcgactccatcacccgtctggcccgtgcctacaacaccgtgatcccgagc
tccggcaaggtattgaccggtggtgtcgatgcccacgccctggaaaaaccgaagcgtttc
ttcggcgccgcgcggaacatcgaagaaggcggctcgctgaccattatcgccaccgcattg
gttgaaaccggttcgaagatggacgaagtgatctacgaagagttcaagggtaccggtaac
atggaactgcccctggaccgtcgcatcgcggaaaaacgcgtgttcccggcgatcaacatc
aaccgctccggcacccgccgcgaagagttgctgaccgccgacgacgaactgcagcgcatg
tggattctgcgcaagctgctgcacccgatggatgaagtggctgccatcgagttcctgatc
gacaagctgaaaaccaccaagaccaacgacgagttcttcctgtcgatgaagcgtaagtaa
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