Pseudomonas lurida: A7318_04325
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Entry
A7318_04325 CDS
T04730
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pfx
Pseudomonas lurida
Pathway
pfx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7318_04325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfx03019
]
A7318_04325
Enzymes [BR:
pfx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A7318_04325
Messenger RNA biogenesis [BR:
pfx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A7318_04325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AOE77829
LinkDB
All DBs
Position
complement(989670..991139)
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AA seq
489 aa
AA seq
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MTVLKALKKMFGKSEAEPLAPVPSAPVPTPGSRNDGKQPGRTAPVAQPKKPTVTPPEQAT
PVEAVPAPVAPKPRRERAPKPPVTPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGF
PYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALI
IAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLDF
NQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVMNL
AKQWTTEPSIVEIEAENVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVFANRKDE
VRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHV
INFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIETLLGRKISCETPPTHL
LRAVERKRP
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atcaccgtgctcaaagcacttaagaagatgttcggcaaaagcgaggctgagccgctcgcg
cctgttcccagtgctcctgtcccgacacccggcagccgcaatgacggtaaacagcccggc
cggaccgcacctgtcgcgcagccgaagaaaccaaccgtgacgccacctgaacaggcaacg
ccggttgaagccgttcccgcgccagtcgcacccaagccgcggcgcgaacgtgctcccaaa
ccgcccgtgaccccatggaagctcgaagacttcgtcgtcgagccccaggaaggcaagacc
cgcttccacgatttcaagctggctccggaactgatgcacgccatccaggacctggggttc
ccgtactgcacgccgatccaggcgcaagtgctgggctttaccctcgcgggcaaagacgcc
atcggccgtgcccagaccggtaccggcaagaccgccgcgttcctgatctcgatcatcacc
caactgctgcaaacgccgccgccgaaagaacgctacatgggtgagccgcgcgcactgatc
atcgcccctacccgggaactggtggttcagatcgccaaggacgccgcggacctgaccaag
tacaccggcctcaacgtcatgacgtttgtgggcggcatggacttcgacaagcagctcaag
caccttgaagcccgtcactgcgacatcctggtggccacccctggccgtttgctcgacttc
aaccagcgcggcgacgtgcacctggacatggtagaagtgatggtcctggacgaagccgac
cgcatgctcgacatgggttttatcccgcaagtgcgtcagatcattcgccagactccgccg
aaatccgaacgccagaccctgctgttctccgcgactttcaccgaagacgtgatgaacctt
gccaagcaatggaccactgagccgtccatcgtcgagatcgaagcggaaaacgtcgccagc
gaaaacgtcgagcaacacatctacgccgtggccggtgcggacaagtacaagctgctctac
aacctggtcaacgacaatggttgggagcgcgtgatggtgtttgccaaccgcaaggacgaa
gtgcgccgcatcgaagaacgcctggtgcgtgacggtgtgaacgccgcgcaactgtccggc
gatgtgccgcaacacaagcgcatcaagacgctggaaggtttccgcgaaggcaagattcgt
gtgctggtggccaccgacgtcgccggtcgcgggattcacatcgacggcatcagccacgtg
atcaacttcaccttgccggaagtacccgacgactacgtgcaccgcatcggccgtaccggt
cgtgccggggctgcgggtgtgtcgatcagttttgccggggaggatgactcgtaccaactg
ccgtcgatcgagacgctgctggggcgcaagatcagctgtgaaacgccgccaacgcatctg
ttgcgcgccgtcgagcgcaaacgtccttaa
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