Pseudomonas lurida: A7318_07655
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Entry
A7318_07655 CDS
T04730
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pfx
Pseudomonas lurida
Pathway
pfx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7318_07655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfx03019
]
A7318_07655
03009 Ribosome biogenesis [BR:
pfx03009
]
A7318_07655
Enzymes [BR:
pfx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A7318_07655
Messenger RNA biogenesis [BR:
pfx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A7318_07655
Ribosome biogenesis [BR:
pfx03009
]
Prokaryotic type
rRNA helicases
A7318_07655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AOE78473
UniProt:
A0A5E6MKM5
LinkDB
All DBs
Position
1711166..1712839
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AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNSAPRGDRPERSGDRPERGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaatattcttgcagcc
gtcgcagcgactggctacgaagaaccttcggcgattcagcagcaatcgatcccgatcatc
atggccggccaggacatgattggccaggcgcaaaccggtaccggtaaaaccgccgcgttc
gccctgcctatcctgcactgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaactcgtgagttggcgctgcaagtagcaaccgcttttgaaacctacgccaagcaa
atgccaggcgttaccgttgtagccgtttacggcggcgcgccgatgggcccgcaactcaag
gctatccgtaacggcgcacagatcgttgtcgccaccccgggccgtctgtgcgaccacctg
cgtcgtgacgagaaagtactgtcgaccgtgaaccacctggttctcgacgaagctgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggcgctgccaccgacc
cgtcagaccgtgctgttctcggccaccctgccacagtcgatccgtgccattgccgaacgc
cacctgcgcgatccgcaacacgtgaagatccagaccaagacccagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctggaagccaaaggctacaaagctgctgcgctgaacggcgacattgcc
cagaaccagcgtgagcgcgtcatcgactccctcaaggatggccgcctggacatcgttgtg
gcgaccgacgttgccgcccgtggcctcgacgttccacgtatcacccacgtgttcaacgtt
gacatgccttacgatccagagtcctacgttcaccgtatcggccgtaccggccgtgcgggt
cgcgaaggtcgtgcattgctgctggtgactccacgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaagtcgctgaagtacgcctgccggatgcccaggcagtcctg
gatgcgcgcatcaagaaactgaccaacagcctggcgcctctggtggctgacgctgaatcg
acccacggcgacctgctggaccgcctgaccgccgatatcggttgcaccccgcgtgccctg
gctgcagccctgctgcgcaaagccaccaatggtcaggccctgaccctggcagccatcgag
aaagaacgtccactggtcccgaacagcgcgccacgcggtgatcgtccagagcgttccggt
gaccgcccagagcgtggtgatcgcgagcgtcgcgctccggttccactggctgaaggccgc
gctcgttgccgcaccgcgctgggcgcgcgtgacggtatcgctgccaagaacctgctgggc
gctatcctcaacgagggtggcctggcacgtgaagccatcggtcgcatccaggtccgtgac
agcttctccctggtggagctgccggaagacggtctggaaaaactgctggccaagctcaag
gacactcgcgttgccggtaagcagctgaagctgcgtcgctaccgcgaagattga
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